Glyma04g06000 - SoyBase

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Report for Sequence Feature Glyma04g06000

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4576192
stop:	4577653
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72510	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1677) \| chr1:27303906-27304403 FORWARD LENGTH=165	SoyBase	E_val: 4.00E-29	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07911	PFAM	Protein of unknown function (DUF1677)	JGI		ISS
UniRef100_I1JU27	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JU27_SOYBN	SoyBase	E_val: 2.00E-117	ISS

Expression Patterns of Glyma04g06000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06000

Paralog	Evidence	Comments
Glyma06g06011	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g057100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06000

Limit To All Plant Sequences

>Glyma04g06000.2   sequence type=transcript   gene model=Glyma04g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAATCACATAAAAGTCTGTTTGATGATATTTTTGAAAACATTAATTCAGTAAATTACTGTTAAGTAAACATAAAGGCTAAGAACAAAGATGCTCCACGAGTATAGATAGATAGACACCTATCAATATTCAATCTATCTAAACGCTCTTTCTTCCGAAGGCAAACACAGATCTATATGAAAGAGAAAAACCAGTGCACTTTCTATTTTTTCTTTCACTAAATTGGATTCTGAGAATCTCAGTGGAGCCTATTAAGGCTCTGCGATATGCACCATACGTTATTCGGTGTTGTGCTTTTCGGCGGCGAGATTGGGTGGGAGAAAGAGATAATTCTTCTTCACTCAAATTTAAATATCATCATTGCAATTTATTGATTTCGATTCTGCTCCCCCATTTAATTGCATTGCTTAATATACAGCAACACGGGTGATGGCAGCGACGACGGCGATGGAGGCGGAGGCGGTGTGGTCCGTGAAGTGCTACTGCTGCGGGTTAACGGAGGAGTGCACGCCGCGTTACATTGACGGCGTTAGAGAGAGATATCAGGGTCGTTGGATTTGTGGTTTGTGTGCAGAGGCAGTGAAGGAAGAGGGTTTGAAATTGAAGGATGATGTTGATGTTGATGTTGATGTTAGCACCGATGAAGCGCTGAAGCGCCACATGAAGTTCAGATCTTCCACTTCTAGCCCTCCCAACAAACCCACCCTTGACTTGATTCTCGCAATGAAGCACCTTCTTTTCCGTTCTTTGGATTCTCCGAGGAAGGAGCCTTTGACTTTTTCGCCACTTGCAACATCACGCACGTGCTTTTCACCTGGATCCTCAAAGGGGGAGCCACAAGAGGCTAGAGAGGTAATTACCAGTGAGTGGTAATAACTGCTGAGTGACTTGGTCGGTGAATAACTGAATTTGCATTGGCAATGACAAAGGCAGAGTTAGGTTTAATTTATTTATCTTGGTTTAGTTATGTTTAATTTGTATTTCTCAGTGACCTTGTTGTTTAGGTTGGTTAATTGGCTTGTTTTGTTTCTATTTTGTGACTTTTTCGACTGAACGGATGATTTGGTTGGAGTATTCCTTCCTTGATTTCAGTCTAAAAATGTCATGGAATTTCCCTTCTTTACCTCTATGTTGACCCAATTCAGACTATGCCTGACATTTTTTCTCTGTTTAAATAAGTTGCACAATCATGTGTATGTGTAATGTGTGTGTGTGTGTTTAATGAGAGACACATTATATTCCCTTTTTACTTTTATTAAGGACTTAACCTTTTAAATGGTTGTGCTACCCTTTTGAGCTTTAGTTTTA

Coding sequences of Glyma04g06000

Limit To All Plant Sequences

>Glyma04g06000.1   sequence type=CDS   gene model=Glyma04g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCATACGTTATTCGGTGTTGTGCTTTTCGGCGGCGAGATTGGGGTGATGGCAGCGACGACGGCGATGGAGGCGGAGGCGGTGTGGTCCGTGAAGTGCTACTGCTGCGGGTTAACGGAGGAGTGCACGCCGCGTTACATTGACGGCGTTAGAGAGAGATATCAGGGTCGTTGGATTTGTGGTTTGTGTGCAGAGGCAGTGAAGGAAGAGGGTTTGAAATTGAAGGATGATGTTGATGTTGATGTTGATGTTAGCACCGATGAAGCGCTGAAGCGCCACATGAAGTTCAGATCTTCCACTTCTAGCCCTCCCAACAAACCCACCCTTGACTTGATTCTCGCAATGAAGCACCTTCTTTTCCGTTCTTTGGATTCTCCGAGGAAGGAGCCTTTGACTTTTTCGCCACTTGCAACATCACGCACGTGCTTTTCACCTGGATCCTCAAAGGGGGAGCCACAAGAGGCTAGAGAGGTAATTACCAGTGAGTGGTAA

>Glyma04g06000.2   sequence type=CDS   gene model=Glyma04g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGACGACGGCGATGGAGGCGGAGGCGGTGTGGTCCGTGAAGTGCTACTGCTGCGGGTTAACGGAGGAGTGCACGCCGCGTTACATTGACGGCGTTAGAGAGAGATATCAGGGTCGTTGGATTTGTGGTTTGTGTGCAGAGGCAGTGAAGGAAGAGGGTTTGAAATTGAAGGATGATGTTGATGTTGATGTTGATGTTAGCACCGATGAAGCGCTGAAGCGCCACATGAAGTTCAGATCTTCCACTTCTAGCCCTCCCAACAAACCCACCCTTGACTTGATTCTCGCAATGAAGCACCTTCTTTTCCGTTCTTTGGATTCTCCGAGGAAGGAGCCTTTGACTTTTTCGCCACTTGCAACATCACGCACGTGCTTTTCACCTGGATCCTCAAAGGGGGAGCCACAAGAGGCTAGAGAGGTAATTACCAGTGAGTGGTAA

Predicted protein sequences of Glyma04g06000

Limit To All Plant Sequences

>Glyma04g06000.1   sequence type=predicted peptide   gene model=Glyma04g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHTLFGVVLFGGEIGVMAATTAMEAEAVWSVKCYCCGLTEECTPRYIDGVRERYQGRWICGLCAEAVKEEGLKLKDDVDVDVDVSTDEALKRHMKFRSSTSSPPNKPTLDLILAMKHLLFRSLDSPRKEPLTFSPLATSRTCFSPGSSKGEPQEAREVITSEW*

>Glyma04g06000.2   sequence type=predicted peptide   gene model=Glyma04g06000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATTAMEAEAVWSVKCYCCGLTEECTPRYIDGVRERYQGRWICGLCAEAVKEEGLKLKDDVDVDVDVSTDEALKRHMKFRSSTSSPPNKPTLDLILAMKHLLFRSLDSPRKEPLTFSPLATSRTCFSPGSSKGEPQEAREVITSEW*

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