Report for Sequence Feature Glyma04g05970
Feature Type: gene_model
Chromosome: Gm04
Start: 4558414
stop: 4561407
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g05970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G21950 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:7254067-7255866 REVERSE LENGTH=308
SoyBase E_val: 1.00E-115 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG1454
KOG
Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)
JGI ISS
PTHR10992 Panther
ALPHA/BETA HYDROLASE RELATED
JGI ISS
PTHR10992:SF163 Panther
HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN
JGI ISS
PF00561 PFAM
alpha/beta hydrolase fold
JGI ISS
UniRef100_G7J939 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase n=1 Tax=Medicago truncatula RepID=G7J939_MEDTR
SoyBase E_val: 7.00E-160 ISS
UniRef100_I1JU24 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU24_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g05970
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g05970
Paralog Evidence Comments
Glyma06g05980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g05970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g056800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g05970
Coding sequences of Glyma04g05970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g05970.1 sequence type=CDS gene model=Glyma04g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTCCCTCATTTCTAAGCCTGGTGTCAGTGTACAGCCTCTACCTCCGACGCTGCTTCACGGGCGCGGGGCTCTCATCGCAGACGCTTAGAGTGGACGACGAATCCACGCTCCACTTCTGGGCCCCGACAAACCCAACGGCCCAGAAGCCTTCCCTGGTTCTGATCCACGGGTTTGGGCCGGAGTCCATATGGCAGTGGCGCAAACAGGTCCAATTCTTAGCCCCTCACTTCAACGTGTACGTTCCGGACCTAATATTCTTCGGAGGATCGAGCACCAAGTCCAGCGAAAGGAGCGAAACGTTTCAGGCAGCGTCGGTGGGGAAGCTTTTGGACAAGTTGGAGGTTGAGAAGTTCCACGTGGTGGGGACGAGTTATGGGGGCATGGTGGCTTACAATTTGGCCAAGATGTTGGGTGAAGACAGGGTGCAAAAAGTGGTTATTGCTAGCTCCGGTGTGAACATGATCAAGAGCAGCAACGTGGCGTTGGTGCAGAGGGCGCAACTGGAGAAGATTGAGGATCTGATGCTGCCTCCTACGCCACAACACTTGCGAATATTGATGAAGTTCTCCATCCACAAGCCTCCCCAACTCTTGCCTGATTTTTTACTCCGGGACTTCTTGGCTAAATTATACGGAGAAAATAGGAAGGAAAAAATGGAGCTTCTGAAAGGGTTAACCGTCGGAAGGGATGATACTTCAAGAATTTCACCTCTTCAACAAGAGGTTCTCATAGTCTGGGGAGAAGAAGACCGAATATTTCCGCTGAAGTTGGCCCACGAACTAAAAGAGATAATCAGTAAAAAGGCAAGATTGGAATTGATAAAGGAGGCATCCCATGTGCCTCAAATGGAAAAGCCAAGAGAATTCAACAACATTCTCCTAAATTTCTTACAGGAGCATTCTTGA
Predicted protein sequences of Glyma04g05970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g05970.1 sequence type=predicted peptide gene model=Glyma04g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLPSFLSLVSVYSLYLRRCFTGAGLSSQTLRVDDESTLHFWAPTNPTAQKPSLVLIHGFGPESIWQWRKQVQFLAPHFNVYVPDLIFFGGSSTKSSERSETFQAASVGKLLDKLEVEKFHVVGTSYGGMVAYNLAKMLGEDRVQKVVIASSGVNMIKSSNVALVQRAQLEKIEDLMLPPTPQHLRILMKFSIHKPPQLLPDFLLRDFLAKLYGENRKEKMELLKGLTVGRDDTSRISPLQQEVLIVWGEEDRIFPLKLAHELKEIISKKARLELIKEASHVPQMEKPREFNNILLNFLQEHS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
