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Report for Sequence Feature Glyma04g05912

Feature Type:gene_model
Chromosome:Gm04
Start:4498632
stop:4509804
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05912
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26330AT Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein | chr2:11208367-11213895 REVERSE LENGTH=976 SoyBaseE_val: 0ISS
GO:0001558GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell growth SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0008356GO-bp Annotation by Michelle Graham. GO Biological Process: asymmetric cell division SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010148GO-bp Annotation by Michelle Graham. GO Biological Process: transpiration SoyBaseN/AISS
GO:0030155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell adhesion SoyBaseN/AISS
GO:0031540GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0048281GO-bp Annotation by Michelle Graham. GO Biological Process: inflorescence morphogenesis SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0051302GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell division SoyBaseN/AISS
GO:2000027GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of organ morphogenesis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0019199GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein kinase activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
KOG2982 KOG Uncharacterized conserved protein JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF825Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_B9RQX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Erecta, putative n=1 Tax=Ricinus communis RepID=B9RQX5_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339356UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339356 related cluster n=1 Tax=unknown RepID=UPI0002339356 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g05912
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g05912 not represented in the dataset
Glyma04g05912 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05912
ParalogEvidenceComments
Glyma06g05900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05912 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g056200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g05912
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g05912
>Glyma04g05912.2   sequence type=transcript   gene model=Glyma04g05912   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAGATAAAGAAGTCGTTCAGTGATGTAGATAACGTTCTGTATGACTGGACAGACTCACCTTCTTCAGATTATTGTGTTTGGAGAGGGGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTCAATCTTTCAGGGTTGAATCTTGAGGGCGAAATTTCACCTGTAATAGGGAGACTTAACAGCTTGGTCTCTATTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAGCTTGGTGATTGTTCCTCTTTGAAAAGCATAGACTTGTCATTTAATGAGATTCGGGGGGATATACCGTTTTCGGTTTCGAAGATGAAACAGCTGGAAAATCTAATTTTGAAAAATAATCAGCTAATTGGACCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATACTGGAATGAAGTTTTACAATATCTTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTACTTTGACGTGAGAAACAATAGCTTGACAGGCACTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCTGTCATTGCAAGGCAATAAATTCTTGGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAATATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTGTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAATATGACAAACCTTCACTATTTGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTCATGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAGCTTGGAGAGTATGACCTATCTTAATCTTTCTTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTGTAAGCTCCTTTTTGTTTCCTTAACTTGAATGTAACTAGAGATGATTGAATGAAAATCCTCTAATGTGTTCTCCACACTTAGGTTCTATTATATTAGCAAACTAAGCTTACTCAGTAAGCTGAAGAGAGGTAAGTACAAA
Coding sequences of Glyma04g05912
>Glyma04g05912.1   sequence type=CDS   gene model=Glyma04g05912   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTTCGGTTTGGACTACTCCTTCTGTTTTCTCTCCTTTGTTTGGATTCAATTGGTTCGGTGAATTCACACGACGGAGAAACGTTGTTGGAGATAAAGAAGTCGTTCAGTGATGTAGATAACGTTCTGTATGACTGGACAGACTCACCTTCTTCAGATTATTGTGTTTGGAGAGGGGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTCAATCTTTCAGGGTTGAATCTTGAGGGCGAAATTTCACCTGTAATAGGGAGACTTAACAGCTTGGTCTCTATTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAGCTTGGTGATTGTTCCTCTTTGAAAAGCATAGACTTGTCATTTAATGAGATTCGGGGGGATATACCGTTTTCGGTTTCGAAGATGAAACAGCTGGAAAATCTAATTTTGAAAAATAATCAGCTAATTGGACCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATACTGGAATGAAGTTTTACAATATCTTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTACTTTGACGTGAGAAACAATAGCTTGACAGGCACTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCTGTCATTGCAAGGCAATAAATTCTTGGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAATATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTGTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAATATGACAAACCTTCACTATTTGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTCATGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAGCTTGGAGAGTATGACCTATCTTAATCTTTCTTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTGAGACTAGAAAAGAACAAATTATCCGGGGACGTGTCTTCACTTTTAAATTGCTTTAGTCTTTCTCTACTTAATGTCTCTTATAACAACCTAGTTGGTGTTATTCCCTCAAGCAAGAATTTTTCCAGGTTTTCCCCTGACAGTTTTATTGGAAATCCTGGTCTTTGTGTCGATTGGCTGGATTCGTCTTGTCTTGGGTCTCACTCTACAGAGCGAGTTACCTTGTCCAAGGCAGCTATCCTAGGAATTGCAATAGGCGCCCTTGCGATTCTTTTTATGATATTGCTAGCAGCTTGCCGACCACACAATCCAGCTTCCTTCTCTGATGATGGATCTTTTGACAAACCAGTTAATTACTCACCTCCAAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACCGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCGAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCGGTGGCTATCAAGAAGCTCTATTCTCACTATCCGCAATATTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTACTCATTGTCTCCATACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATGGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTTGGATCGGCCCAAGGACTTTCTTATCTGCACCACGATTGCAGTCCACGTATCATTCACAGGGATGTGAAATCATCTAATATTTTACTTGACAAAGATTTTGAGCCCCATCTCACCGATTTTGGCATTGCAAAAAGTCTCTGTCCATCTAAGACCCACACTTCAACTTACATAATGGGCACAATTGGCTATATAGATCCAGAGTATGCTAGGACTTCTCGCCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATTGTATTGCTTGAGCTCCTGACTGGAAGGAAAGCTGTTGACAATGAATCAAACCTCCACCATCTGATTTTGTCCAAGACAGCTAATGATGGTGTAATGGAAACCGTTGATCCAGATATTACTGCTACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTATGCACAAAGAAGCAACCAGTTGATAGGCCTACAATGCATGAGGTGACTCGTGTGCTGGCAAGCCTTGTGCCATCCATCACTCCACCAAAACAAACTGACCAAACACAAGTAGTGCTATCTGATTCACAGCCATCTGCTAAAATGCAATGCTACAAGGATGAATATGCAAATCTTACAACTCCACACCTTGTGAACTGTCCATCCATGAGCACCTCTGATGCCCAACTCTTCCTCAAATTTGGAGAAGTAATATCACAAAACAGTCACTGA

>Glyma04g05912.2   sequence type=CDS   gene model=Glyma04g05912   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACAGCTGGAAAATCTAATTTTGAAAAATAATCAGCTAATTGGACCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATACTGGAATGAAGTTTTACAATATCTTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTACTTTGACGTGAGAAACAATAGCTTGACAGGCACTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCTGTCATTGCAAGGCAATAAATTCTTGGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAATATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTGTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAATATGACAAACCTTCACTATTTGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTCATGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAGCTTGGAGAGTATGACCTATCTTAATCTTTCTTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTGTAA
Predicted protein sequences of Glyma04g05912
>Glyma04g05912.1   sequence type=predicted peptide   gene model=Glyma04g05912   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFRFGLLLLFSLLCLDSIGSVNSHDGETLLEIKKSFSDVDNVLYDWTDSPSSDYCVWRGVTCDNVTFNVVALNLSGLNLEGEISPVIGRLNSLVSIDFKENRLSGQIPDELGDCSSLKSIDLSFNEIRGDIPFSVSKMKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGTIPENIGNCTTLGVLDLSYNKLTGEIPFNIGYLQVATLSLQGNKFLGHIPSVIGLMQALTVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGLIPPELGNMTNLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPVPDNLSSCKNLNSLNVHGNKLSGTVPSAFHSLESMTYLNLSSNNLQGSIPIELSRIGNLDTLDISNNNIIGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNIISLRLEKNKLSGDVSSLLNCFSLSLLNVSYNNLVGVIPSSKNFSRFSPDSFIGNPGLCVDWLDSSCLGSHSTERVTLSKAAILGIAIGALAILFMILLAACRPHNPASFSDDGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQYLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSIWDLLHGPTKKKKLDWDLRLKIALGSAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKTHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANDGVMETVDPDITATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLASLVPSITPPKQTDQTQVVLSDSQPSAKMQCYKDEYANLTTPHLVNCPSMSTSDAQLFLKFGEVISQNSH*

>Glyma04g05912.2   sequence type=predicted peptide   gene model=Glyma04g05912   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGTIPENIGNCTTLGVLDLSYNKLTGEIPFNIGYLQVATLSLQGNKFLGHIPSVIGLMQALTVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGLIPPELGNMTNLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPVPDNLSSCKNLNSLNVHGNKLSGTVPSAFHSLESMTYLNLSSNNLQGSIPIELSRIGNLDTLDISNNNIIGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNIISL*






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