Glyma04g05840 - SoyBase

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Report for Sequence Feature Glyma04g05840

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4443459
stop:	4447626
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G21482	AT	Annotation by Michelle Graham. TAIR10: cytokinin oxidase 7 \| chr5:7226842-7230052 FORWARD LENGTH=524	SoyBase	E_val: 0	ISS
GO:0009690	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process	SoyBase	N/A	ISS
GO:0009823	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0019139	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytokinin dehydrogenase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG1231	KOG	Proteins containing the FAD binding domain	JGI		ISS
PTHR11748	Panther	D-LACTATE DEHYDROGENASE	JGI		ISS
PTHR11748:SF31	Panther	CKX7 (CYTOKININ OXIDASE 7), OXIDOREDUCTASE	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
PF09265	PFAM	Cytokinin dehydrogenase 1, FAD and cytokinin binding	JGI		ISS
UniRef100_G7I912	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin dehydrogenase n=1 Tax=Medicago truncatula RepID=G7I912_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233934E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233934E related cluster n=1 Tax=unknown RepID=UPI000233934E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g055600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05840

Limit To All Plant Sequences

>Glyma04g05840.3   sequence type=transcript   gene model=Glyma04g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGATCATAGCGTCGACGGAATATTGAAAGGGGCGATAACGTCATAATTCTAATGAATCCTCAAAAATCCCACTACTGCCTTTTTTTAATCATTAAAAAAATCCAAAGCAGCCGCTATTTAATGCCAAACTTCACCTGGTAGAAGAAGAAGAAGAAGAAGGACACTCTTCAGTTTTTGCTAAGTAGTCAAAAAAAAAAAAAAAAACTACCGGTCACCAACGCCGGCGATGCTAGCTTACCTGGAACACTTCGTTCACGAAAACGACGCCGAATCGAGGCAAGACGACGACGTAGCGACCCTCTCCAAAGCGCTTGAGCTTCAAGCCAGCGTCGAGGAATTCGGTCCCACCGGAGTCGCCGGCAAGGATTTCGGCGGAATCAAGTCCGTCAAACCCTTGGCCCTGATCAGGCCCTCTGCCGCCGCCGACGTCGCCAGAGTGGTGAAGCACGCGGCGGCGTCTTCTAGTCTCACGGTGGTGGCGCGCGGGAACGGCCACTCCATCAACGGGCCAGGCCATGGCGGAGCAGGGCCTGGTCCTCGACATGCGCGCCATCCAGGACCCGTTTGAGATTCTCTGGATAGAAGGTTCTCCCTACGTCGACGTTTCGGGAGGGGCATTATGGGAAGACGTCCTTAAACGCTGCGTTTCGGAGTTTGGCCTCGCCCCGAGGTCGTGGACGGATTATCTCAGCTTAACGGTGGGCGGAACGCTCTCCTACGCCGGCGTCAGCGGTCAAACATTCCGTTACGGTCCTCAGACATCGAACGTAACGGAATTGGAAGTTGTAACTGGGAAAGGAGACACACTGTGCTGCTCCCAAACAGAAAACTCTGAACTTTTTTTTGGCGCGCTTGGTGGCTTAGGACAGTTCGGTATCATTACCAGAGCCAGGGTCGTTCTTCAAGAAGCTCCAGATATGGTGAGGTGGATAAGAGTGGTATACTCTGAGTTTGAGGAGTATGCTAGGGATGCAGAGTCGCTGGTGGAGGAATATTGTTTTGATTACGTGGAAGGGTTCGTTCTGGTGAACAGTGATAACCGGGCCAATGGATGGCCCACAGTTCCATTGGGCCCGGAACAAGTGTTCGACCCGACTCATATCCCTTTCACTGCTGGTCCTGTCTTGTATTGCTTGGAGCTCGCTCTTCACTATCGTAACGCGGATCATCCTTCTCGTGTCGATACGGATGTGGATGGATTGCTTGGACGGCTACGATTCATTCAGGGTCTGAAGTTCCAGGTGGACGTGACATACATGGAGTTCTTGCTGCGTGTAAAGCGTGTGGAGGAGCACGCGAAAGGCAACGGAACCTGGGATGCACCTCACCCTTGGCTCAATCTGTTCGTGTCCAAGTCCCACATCGTTGATTTTGATCGTGAGGTGTTCAAGAAGATTCTCAAGGACGGAGTCGATGGACCCATTTTAGTCTACCCTCTCTTGCGAAACAACTATATTGTAAGGAAAATATCCAGCCAGGTCAAATTAATATGCAAGGGGTTTGGTCTTTCGCCAAGTCTAATAATGATTGATGGTAGGATTCCATCTAAATCTAATCGAACCCTATATATGTATGAGCTGATCAACGAACGTCATAGGCTCAGAGAAGATCGATCAAAATCAAAGTATAGTATAATATAATATCTGGGTGGTCGTGCATGAGGACGTCGTAAATGGAAAGCTTAATTGCTTAGCGTCATTTTCATCTTAGCTATTTTGTCAAGGGAATTGTAGCAGCTAAGCTGGCAAGTGCTTTTCAACCAGTCCTTTTTTCTTCCCTTGGTCCAGTTGGTATTTAATCTATCAGAACCTACGTAACAATCATCAATATGCACCGCTCACTACATAAATATATATGCCTCTTGTTTTTTTTAGACAATTTTAACTGA

Coding sequences of Glyma04g05840

Limit To All Plant Sequences

>Glyma04g05840.2   sequence type=CDS   gene model=Glyma04g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGCAGGGCCTGGTCCTCGACATGCGCGCCATCCAGGACCCGTTTGAGATTCTCTGGATAGAAGGTTCTCCCTACGTCGACGTTTCGGGAGGGGCATTATGGGAAGACGTCCTTAAACGCTGCGTTTCGGAGTTTGGCCTCGCCCCGAGGTCGTGGACGGATTATCTCAGCTTAACGGTGGGCGGAACGCTCTCCTACGCCGGCGTCAGCGGTCAAACATTCCGTTACGGTCCTCAGACATCGAACGTAACGGAATTGGAAGTTGTAACTGGGAAAGGAGACACACTGTGCTGCTCCCAAACAGAAAACTCTGAACTTTTTTTTGGCGCGCTTGGTGGCTTAGGACAGTTCGGTATCATTACCAGAGCCAGGGTCGTTCTTCAAGAAGCTCCAGATATGGTGAGGTGGATAAGAGTGGTATACTCTGAGTTTGAGGAGTATGCTAGGGATGCAGAGTCGCTGGTGGAGGAATATTGTTTTGATTACGTGGAAGGGTTCGTTCTGGTGAACAGTGATAACCGGGCCAATGGATGGCCCACAGTTCCATTGGGCCCGGAACAAGTGTTCGACCCGACTCATATCCCTTTCACTGCTGGTCCTGTCTTGTATTGCTTGGAGCTCGCTCTTCACTATCGTAACGCGGATCATCCTTCTCGTGTCGATACGGATGTGGATGGATTGCTTGGACGGCTACGATTCATTCAGGGTCTGAAGTTCCAGGTGGACGTGACATACATGGAGTTCTTGCTGCGTGTAAAGCGTGTGGAGGAGCACGCGAAAGGCAACGGAACCTGGGATGCACCTCACCCTTGGCTCAATCTGTTCGTGTCCAAGTCCCACATCGTTGATTTTGATCGTGAGGTGTTCAAGAAGATTCTCAAGGACGGAGTCGATGGACCCATTTTAGTCTACCCTCTCTTGCGAAACAAGTGGGATAGTCGTCATTCAGTGGTGGTGCCGGACAGTGACATGTTCTACATAGTAGCCTTGCTCCGATTCACTCCACCACCCCCAAAGGGCCCAGCAGCTGAACTCTTGGTGGCGCAAAATAATGAGATTATTGAGTTCTGCACAAGCAGAAGCCTTGATTTCAAGCTATACTTTCCTCACTACCAGTCACGGGAGGATTGGATCAAGCACTTTGGGAATCAATGGGCCAGATTTGCGGAGCGAAAGGCCAATTTTGATCCCATGGCTATCCTTGCACCAGGACAGAAAATTTTCTCCAGAACCTCTCAACCTCAACCTCCTTCTATCACATAA

>Glyma04g05840.3   sequence type=CDS   gene model=Glyma04g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGCAGGGCCTGGTCCTCGACATGCGCGCCATCCAGGACCCGTTTGAGATTCTCTGGATAGAAGGTTCTCCCTACGTCGACGTTTCGGGAGGGGCATTATGGGAAGACGTCCTTAAACGCTGCGTTTCGGAGTTTGGCCTCGCCCCGAGGTCGTGGACGGATTATCTCAGCTTAACGGTGGGCGGAACGCTCTCCTACGCCGGCGTCAGCGGTCAAACATTCCGTTACGGTCCTCAGACATCGAACGTAACGGAATTGGAAGTTGTAACTGGGAAAGGAGACACACTGTGCTGCTCCCAAACAGAAAACTCTGAACTTTTTTTTGGCGCGCTTGGTGGCTTAGGACAGTTCGGTATCATTACCAGAGCCAGGGTCGTTCTTCAAGAAGCTCCAGATATGGTGAGGTGGATAAGAGTGGTATACTCTGAGTTTGAGGAGTATGCTAGGGATGCAGAGTCGCTGGTGGAGGAATATTGTTTTGATTACGTGGAAGGGTTCGTTCTGGTGAACAGTGATAACCGGGCCAATGGATGGCCCACAGTTCCATTGGGCCCGGAACAAGTGTTCGACCCGACTCATATCCCTTTCACTGCTGGTCCTGTCTTGTATTGCTTGGAGCTCGCTCTTCACTATCGTAACGCGGATCATCCTTCTCGTGTCGATACGGATGTGGATGGATTGCTTGGACGGCTACGATTCATTCAGGGTCTGAAGTTCCAGGTGGACGTGACATACATGGAGTTCTTGCTGCGTGTAAAGCGTGTGGAGGAGCACGCGAAAGGCAACGGAACCTGGGATGCACCTCACCCTTGGCTCAATCTGTTCGTGTCCAAGTCCCACATCGTTGATTTTGATCGTGAGGTGTTCAAGAAGATTCTCAAGGACGGAGTCGATGGACCCATTTTAGTCTACCCTCTCTTGCGAAACAACTATATTGTAAGGAAAATATCCAGCCAGGTCAAATTAATATGCAAGGGGTTTGGTCTTTCGCCAAGTCTAATAATGATTGATGGTAGGATTCCATCTAAATCTAATCGAACCCTATATATGTATGAGCTGATCAACGAACGTCATAGGCTCAGAGAAGATCGATCAAAATCAAAGTATAGTATAATATAA

Predicted protein sequences of Glyma04g05840

Limit To All Plant Sequences

>Glyma04g05840.2   sequence type=predicted peptide   gene model=Glyma04g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQGLVLDMRAIQDPFEILWIEGSPYVDVSGGALWEDVLKRCVSEFGLAPRSWTDYLSLTVGGTLSYAGVSGQTFRYGPQTSNVTELEVVTGKGDTLCCSQTENSELFFGALGGLGQFGIITRARVVLQEAPDMVRWIRVVYSEFEEYARDAESLVEEYCFDYVEGFVLVNSDNRANGWPTVPLGPEQVFDPTHIPFTAGPVLYCLELALHYRNADHPSRVDTDVDGLLGRLRFIQGLKFQVDVTYMEFLLRVKRVEEHAKGNGTWDAPHPWLNLFVSKSHIVDFDREVFKKILKDGVDGPILVYPLLRNKWDSRHSVVVPDSDMFYIVALLRFTPPPPKGPAAELLVAQNNEIIEFCTSRSLDFKLYFPHYQSREDWIKHFGNQWARFAERKANFDPMAILAPGQKIFSRTSQPQPPSIT*

>Glyma04g05840.3   sequence type=predicted peptide   gene model=Glyma04g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQGLVLDMRAIQDPFEILWIEGSPYVDVSGGALWEDVLKRCVSEFGLAPRSWTDYLSLTVGGTLSYAGVSGQTFRYGPQTSNVTELEVVTGKGDTLCCSQTENSELFFGALGGLGQFGIITRARVVLQEAPDMVRWIRVVYSEFEEYARDAESLVEEYCFDYVEGFVLVNSDNRANGWPTVPLGPEQVFDPTHIPFTAGPVLYCLELALHYRNADHPSRVDTDVDGLLGRLRFIQGLKFQVDVTYMEFLLRVKRVEEHAKGNGTWDAPHPWLNLFVSKSHIVDFDREVFKKILKDGVDGPILVYPLLRNNYIVRKISSQVKLICKGFGLSPSLIMIDGRIPSKSNRTLYMYELINERHRLREDRSKSKYSII*

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