Glyma04g05810 - SoyBase

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Report for Sequence Feature Glyma04g05810

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4416356
stop:	4422168
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G21430	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr5:7222294-7223400 FORWARD LENGTH=218	SoyBase	E_val: 5.00E-60	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF166	Panther		JGI		ISS
UniRef100_G7J8E5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ domain family n=1 Tax=Medicago truncatula RepID=G7J8E5_MEDTR	SoyBase	E_val: 2.00E-85	ISS
UniRef100_I1JU07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU07_SOYBN	SoyBase	E_val: 2.00E-153	ISS

Expression Patterns of Glyma04g05810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05810

Paralog	Evidence	Comments
Glyma06g05820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g055400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05810

Limit To All Plant Sequences

>Glyma04g05810.2   sequence type=transcript   gene model=Glyma04g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGATTCATGGAGATCATTTGCATCCCGCAATGCAGACCACTAGCTACAAATATGGGAAACTGGTACACTATGCTAAAAGTTGTAGGGGTGAGGGCAATCCCAACCAAGGTCACAAAACCAGGGGAGAGTCTTTACACTCCAGGGGGAAAATGTGAAGGAGTTAGGGGCAATCCCAACCAAGGTCACAGAACCAGGGGAGAGTCTTTACACTCCAGGGGGAAAAGGTGAAGGAGTCTGACGGTTTGATTCAAGATTAATACCATAGCCCAAGTGCGTGGCACAGAAAGGTGAAGCAATGGCTGTGTCCTCCACCACTGCCACAGTATGTATTCCTGCTAAGAACATTCCAACCACTCAAGCACCAAAAATTGGATTCTCAAGTACCATCGCCTTTGCTGCGAAACCGCGAAGAAGATTATTACGCATCAGAAGCTCCTCAGCCGAAACATCTGGCACAGAGGTAGATTCAGAGACTTCCATTGAAGTTCCAGAAGAAACATCATCACTCATTTCTGCTCTTAACGTCGAAAAGATTCTCCGTGGCTTACCAATTACAGATGCAGATCATTATGGTAGGCTAGGTATTCCAAGAGGATGTCCCTTTGACTTGGTGGGGGGTGCATATAATATCAAGGTTCAAGAATTGAAGAGTCAGAATTTAGAGGAGGATGAACTTGAGAAGAAATTGGAACTTCTCAAAGAATCATACACCATCCTGTCATCGGAGGAAGAAAGAAGAATATATGACTGGAGCTTGGCCAGAGCAGAAAATACAGACAAATTCGTTTGGCCGTTCGAGGTTGACATAACACAGTCAAAAATTTCAAAAGAAGATCCTCCACAACTGGACCCCGAGGATGTCGGACCAACGAGAGTAGTTGGGTATTTCTTATTGGGATGGATAATGCTATCTATTGTGTTATCTATTGCACTAAACTTGTAAAGAGAAAGACCAATTCTACAATGTTTTAAGTGAGTTTGGAGTATGGATTTTTTTTCCTTTTATATGATATGAAAGGTAATTTTTGTTTTTATCCATTTTTGTGCATTTGAAGATAAAACTCATTTTATATATGATACGCATTTGCCTAACACATTTTTAATTATTAGCTAAAATTCATTTAAAAAA

Coding sequences of Glyma04g05810

Limit To All Plant Sequences

>Glyma04g05810.1   sequence type=CDS   gene model=Glyma04g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGTCCTCCACCACTGCCACAGTATGTATTCCTGCTAAGAACATTCCAACCACTCAAGCACCAAAAATTGGATTCTCAAGTACCATCGCCTTTGCTGCGAAACCGCGAAGAAGATTATTACGCATCAGAAGCTCCTCAGCCGAAACATCTGGCACAGAGGTAGATTCAGAGACTTCCATTGAAGTTCCAGAAGAAACATCATCACTCATTTCTGCTCTTAACGTCGAAAAGATTCTCCGTGGCTTACCAATTACAGATGCAGATCATTATGGTAGGCTAGGTATTCCAAGAGGATGTCCCTTTGACTTGGTGGGGGGTGCATATAATATCAAGGTTCAAGAATTGAAGAGTCAGAATTTAGAGGAGGATGAACTTGAGAAGAAATTGGAACTTCTCAAAGAATCATACACCATCCTGTCATCGGAGGAAGAAAGAAGAATATATGACTGGAGCTTGGCCAGAGCAGAAAATACAGACAAATTCGTTTGGCCGTTCGAGGTTGACATAACACAGTCAAAAATTTCAAAAGAAGATCCTCCACAACTGGACCCCGAGGATGTCGGACCAACGAGAGTAGTTGGGTATTTCTTATTGGGATGGATAATGCTATCTATTGTGTTATCTATTGCACTAAACTTGTAA

>Glyma04g05810.2   sequence type=CDS   gene model=Glyma04g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGTCCTCCACCACTGCCACAGTATGTATTCCTGCTAAGAACATTCCAACCACTCAAGCACCAAAAATTGGATTCTCAAGTACCATCGCCTTTGCTGCGAAACCGCGAAGAAGATTATTACGCATCAGAAGCTCCTCAGCCGAAACATCTGGCACAGAGGTAGATTCAGAGACTTCCATTGAAGTTCCAGAAGAAACATCATCACTCATTTCTGCTCTTAACGTCGAAAAGATTCTCCGTGGCTTACCAATTACAGATGCAGATCATTATGGTAGGCTAGGTATTCCAAGAGGATGTCCCTTTGACTTGGTGGGGGGTGCATATAATATCAAGGTTCAAGAATTGAAGAGTCAGAATTTAGAGGAGGATGAACTTGAGAAGAAATTGGAACTTCTCAAAGAATCATACACCATCCTGTCATCGGAGGAAGAAAGAAGAATATATGACTGGAGCTTGGCCAGAGCAGAAAATACAGACAAATTCGTTTGGCCGTTCGAGGTTGACATAACACAGTCAAAAATTTCAAAAGAAGATCCTCCACAACTGGACCCCGAGGATGTCGGACCAACGAGAGTAGTTGGGTATTTCTTATTGGGATGGATAATGCTATCTATTGTGTTATCTATTGCACTAAACTTGTAA

Predicted protein sequences of Glyma04g05810

Limit To All Plant Sequences

>Glyma04g05810.1   sequence type=predicted peptide   gene model=Glyma04g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSSTTATVCIPAKNIPTTQAPKIGFSSTIAFAAKPRRRLLRIRSSSAETSGTEVDSETSIEVPEETSSLISALNVEKILRGLPITDADHYGRLGIPRGCPFDLVGGAYNIKVQELKSQNLEEDELEKKLELLKESYTILSSEEERRIYDWSLARAENTDKFVWPFEVDITQSKISKEDPPQLDPEDVGPTRVVGYFLLGWIMLSIVLSIALNL*

>Glyma04g05810.2   sequence type=predicted peptide   gene model=Glyma04g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSSTTATVCIPAKNIPTTQAPKIGFSSTIAFAAKPRRRLLRIRSSSAETSGTEVDSETSIEVPEETSSLISALNVEKILRGLPITDADHYGRLGIPRGCPFDLVGGAYNIKVQELKSQNLEEDELEKKLELLKESYTILSSEEERRIYDWSLARAENTDKFVWPFEVDITQSKISKEDPPQLDPEDVGPTRVVGYFLLGWIMLSIVLSIALNL*

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