Glyma04g05800 - SoyBase

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Report for Sequence Feature Glyma04g05800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4413372
stop:	4414087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G06520	AT	Annotation by Michelle Graham. TAIR10: photosystem II subunit X \| chr2:2587868-2588218 REVERSE LENGTH=116	SoyBase	E_val: 4.00E-26	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009523	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06596	PFAM	Photosystem II reaction centre X protein (PsbX)	JGI		ISS
UniRef100_G7J8E2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ultraviolet-B-repressible protein n=1 Tax=Medicago truncatula RepID=G7J8E2_MEDTR	SoyBase	E_val: 2.00E-47	ISS
UniRef100_I1JU06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU06_SOYBN	SoyBase	E_val: 9.00E-80	ISS

Expression Patterns of Glyma04g05800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05800

Paralog	Evidence	Comments
Glyma06g05810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g055300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05800

Limit To All Plant Sequences

>Glyma04g05800.1   sequence type=CDS   gene model=Glyma04g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGCTTCTGTTCCCATGGCGTTGTCACTGAGCTCTGTTACCAACAACAACAAGCCTTCATCCGAAGCCTTCTTCAGGCCACTACCCCTACGCCAACCAAAGAGGACCCTCTTCACCACGAAGGCAGTGTCAAACTCCAAGCCTCAAATCAATGCATCTTTGAAGGAGAAGGCAGTTGCCGGACTCACAGCAGCTTCTGTGACAGCATCTATGGTGGTTCCGGAGGTGGCTCATGCTGCTGGATATGAGTTCTCCCCTTCCCTAAAGAACTTTCTACTCAGCATCTTTGCTGGTGGGGTTGTTCTAGCAGCCATATTTGGAGCCGTTATTGGGGTTTCCAACTTTGATCCGGTTAAGAGAACTTAA

Predicted protein sequences of Glyma04g05800

Limit To All Plant Sequences

>Glyma04g05800.1   sequence type=predicted peptide   gene model=Glyma04g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASVPMALSLSSVTNNNKPSSEAFFRPLPLRQPKRTLFTTKAVSNSKPQINASLKEKAVAGLTAASVTASMVVPEVAHAAGYEFSPSLKNFLLSIFAGGVVLAAIFGAVIGVSNFDPVKRT*

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