Glyma04g05790 - SoyBase

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Report for Sequence Feature Glyma04g05790

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4407923
stop:	4411909
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12080	AT	Annotation by Michelle Graham. TAIR10: mechanosensitive channel of small conductance-like 10 \| chr5:3898182-3900923 REVERSE LENGTH=734	SoyBase	E_val: 0	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0050982	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of mechanical stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008381	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mechanically-gated ion channel activity	SoyBase	N/A	ISS
KOG4629	KOG	Predicted mechanosensitive ion channel	JGI		ISS
PF00924	PFAM	Mechanosensitive ion channel	JGI		ISS
UniRef100_G7J8E6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fgenesh protein n=1 Tax=Medicago truncatula RepID=G7J8E6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JU05	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JU05_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05790

Paralog	Evidence	Comments
Glyma06g05800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g055200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05790

Limit To All Plant Sequences

>Glyma04g05790.3   sequence type=transcript   gene model=Glyma04g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTACATCCATAGAGTCTTCGTTTCTGTTTCATTTGGCCTTTCTTTGGGACCTGGGACTTCGCAAAACCAGAGTTTCCTCTTACAGCAACTCACTCTCACATTCCCATTGCGCTATCTTCTCTGCTCCAAAGACTCATACTTTCAAATTAGTCTGCCTCCTTAGTCCTTGCCCCCAAACCTTTGCCGTTGTTTTTGACTCACATCATATGGTTATGAATGGATGGTGCTGAAAGGCGGTGAAGTAAGCATGTCTGAGAAGAAAAGGGAAGTGATGGTGGCGATTCCACATGAGGGTGGTGCTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGTGAATTCGCCACACAGAGCATTAAACGACAACGAGGTTGCTGCAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTCCCACTTCCAATGCCATCCTCACTCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAATCTTACCCCATTGATGGGACCCTTTTGGAAGAGAATGCTACCTCAACTTTGCAAGAAAATTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAACCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGGTCACTCCCAAGACGCCGCTGATGGCATCTCCCGGGCTGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACATGCGTAGTAGGAGACTGACTGTTAAGGTTTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAACTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGCTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGCATGTTGGTTACCAGATGGTTCATGCTCATTGTGGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTAGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGTGGGGTCCACCGAACTGAATTGGCGTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAAATCTTGGCATCGAATTTCCACGTTAAGTCTTTTTTTGATCGAATTCAAGAATCTCTCTTCCATCAGTACATTCTGCAGAATCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCATACAGTGTTGGTCGCTTTAGTTTCAGGAGTACAGATGGTAAAGGCGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCGGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTAGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAAGAACGCAGAGCATTAGCACATGCCTTGAGTGACACCAAAACAGCTGTAAAACAACTAAACAAGCTCGTGACAGTACTCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCGACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAACAATGAAAAGGTGTATTATCCAAATTCTTTACTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCGATTGATTTTATGACACCAGCCGAGAAGATTGGGGAACTGAAAGAAAAAATAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCCAATCATGGCTTAGTAGTGAAGGAGCTTGAAGATGTAAACAAGATTAAGATGGGTCTTAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAACTGGTGATGGAATTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTTAGACATATTGAATCAAACTCAAGTTTGCTCAATATATGATTCAGCTGCATGCATGTGTGCCTCCTATGTTTCATTTCATCTGTCAAATACCACCAGACCTTTTCTTTGGTTGATTTAATTCATGATAGTTGGGAGTGGTGCTTTAGTAAAGTATATATATAGGGCCTTGATTAACAGACAGTATTAACAATTTTTTTTTCCCTAGATATGATTGTGAAATTATGAATTCAGGACTCTTATGCTTGACTATACGAACCATAAAGTGGATCCAATGTAAAAGTAAAATTTCGTCCCACAATTGAACTCTTTCTGCGTCTGGCTATAATTCTGATGTCTGTTGAATGGAGGTTTAGCTTCTTTTC

Coding sequences of Glyma04g05790

Limit To All Plant Sequences

>Glyma04g05790.2   sequence type=CDS   gene model=Glyma04g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTGAAAGGCGGTGAAGTAAGCATGTCTGAGAAGAAAAGGGAAGTGATGGTGGCGATTCCACATGAGGGTGGTGCTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGTGAATTCGCCACACAGAGCATTAAACGACAACGAGGTTGCTGCAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTCCCACTTCCAATGCCATCCTCACTCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAATCTTACCCCATTGATGGGACCCTTTTGGAAGAGAATGCTACCTCAACTTTGCAAGAAAATTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAACCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGGTCACTCCCAAGACGCCGCTGATGGCATCTCCCGGGCTGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACATGCGTAGTAGGAGACTGACTGTTAAGGTTTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAACTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGCTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGCATGTTGGTTACCAGATGGTTCATGCTCATTGTGGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTAGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGTGGGGTCCACCGAACTGAATTGGCGTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAAATCTTGGCATCGAATTTCCACGTTAAGTCTTTTTTTGATCGAATTCAAGAATCTCTCTTCCATCAGTACATTCTGCAGAATCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCATACAGTGTTGGTCGCTTTAGTTTCAGGAGTACAGATGGTAAAGGCGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCGGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTAGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAAGAACGCAGAGCATTAGCACATGCCTTGAGTGACACCAAAACAGCTGTAAAACAACTAAACAAGCTCGTGACAGTACTCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCGACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAACAATGAAAAGGTGTATTATCCAAATTCTTTACTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCGATTGATTTTATGACACCAGCCGAGAAGATTGGGGAACTGAAAGAAAAAATAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCCAATCATGGCTTAGTAGTGAAGGAGCTTGAAGATGTAAACAAGATTAAGATGGGTCTTAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAACTGGTGATGGAATTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTTAGACATATTGAATCAAACTCAAGTTTGCTCAATATATGA

>Glyma04g05790.3   sequence type=CDS   gene model=Glyma04g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTGAAAGGCGGTGAAGTAAGCATGTCTGAGAAGAAAAGGGAAGTGATGGTGGCGATTCCACATGAGGGTGGTGCTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGTGAATTCGCCACACAGAGCATTAAACGACAACGAGGTTGCTGCAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTCCCACTTCCAATGCCATCCTCACTCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAATCTTACCCCATTGATGGGACCCTTTTGGAAGAGAATGCTACCTCAACTTTGCAAGAAAATTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAACCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGGTCACTCCCAAGACGCCGCTGATGGCATCTCCCGGGCTGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACATGCGTAGTAGGAGACTGACTGTTAAGGTTTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAACTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGCTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGCATGTTGGTTACCAGATGGTTCATGCTCATTGTGGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTAGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGTGGGGTCCACCGAACTGAATTGGCGTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAAATCTTGGCATCGAATTTCCACGTTAAGTCTTTTTTTGATCGAATTCAAGAATCTCTCTTCCATCAGTACATTCTGCAGAATCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCATACAGTGTTGGTCGCTTTAGTTTCAGGAGTACAGATGGTAAAGGCGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCGGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTAGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAAGAACGCAGAGCATTAGCACATGCCTTGAGTGACACCAAAACAGCTGTAAAACAACTAAACAAGCTCGTGACAGTACTCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCGACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAACAATGAAAAGGTGTATTATCCAAATTCTTTACTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCGATTGATTTTATGACACCAGCCGAGAAGATTGGGGAACTGAAAGAAAAAATAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCCAATCATGGCTTAGTAGTGAAGGAGCTTGAAGATGTAAACAAGATTAAGATGGGTCTTAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAACTGGTGATGGAATTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTTAGACATATTGAATCAAACTCAAGTTTGCTCAATATATGA

Predicted protein sequences of Glyma04g05790

Limit To All Plant Sequences

>Glyma04g05790.2   sequence type=predicted peptide   gene model=Glyma04g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLKGGEVSMSEKKREVMVAIPHEGGAESLMPKQQSRVNSPHRALNDNEVAAKSPPLNCASPEIRFMPSPNKPPKVPTSNAILTRRKSLTRSVYSKPKSRFGEQSYPIDGTLLEENATSTLQENLTVGSPYKASPNNNNKPGTVNRTFSILSVVTPKTPLMASPGLAGEDFDEIIYKKVELSKNMRSRRLTVKVLFEWFVFVCIASSLVASLTVGKLKRTEIWGLGFWRWCVLVMVTFCGMLVTRWFMLIVVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQNLSGPPLVEEAEKVGASYSVGRFSFRSTDGKGGTKKETIDIAKLHRMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSLLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGELKEKIKRYLERNPQYWHPNHGLVVKELEDVNKIKMGLNVTHTMNFQEFGEKTKRRTELVMELKKIFEELNIRYNLLPQGIHLRHIESNSSLLNI*

>Glyma04g05790.3   sequence type=predicted peptide   gene model=Glyma04g05790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLKGGEVSMSEKKREVMVAIPHEGGAESLMPKQQSRVNSPHRALNDNEVAAKSPPLNCASPEIRFMPSPNKPPKVPTSNAILTRRKSLTRSVYSKPKSRFGEQSYPIDGTLLEENATSTLQENLTVGSPYKASPNNNNKPGTVNRTFSILSVVTPKTPLMASPGLAGEDFDEIIYKKVELSKNMRSRRLTVKVLFEWFVFVCIASSLVASLTVGKLKRTEIWGLGFWRWCVLVMVTFCGMLVTRWFMLIVVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQNLSGPPLVEEAEKVGASYSVGRFSFRSTDGKGGTKKETIDIAKLHRMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSLLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGELKEKIKRYLERNPQYWHPNHGLVVKELEDVNKIKMGLNVTHTMNFQEFGEKTKRRTELVMELKKIFEELNIRYNLLPQGIHLRHIESNSSLLNI*

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