Glyma04g05780 - SoyBase

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Report for Sequence Feature Glyma04g05780

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4395645
stop:	4396829
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54200	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). \| chr1:20235855-20236955 FORWARD LENGTH=366	SoyBase	E_val: 1.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q287W0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Olimarabidopsis pumila RepID=Q287W0_OLIPU	SoyBase	E_val: 2.00E-20	ISS
UniRef100_UPI0002339694	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339694 related cluster n=1 Tax=unknown RepID=UPI0002339694	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05780

Paralog	Evidence	Comments
Glyma06g05780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g055100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05780

Limit To All Plant Sequences

>Glyma04g05780.2   sequence type=CDS   gene model=Glyma04g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACAACAAAGAGAGAACAACAAAGGCTCAGGTTCCAAAACCACGCTAAAAAACCCTCCTTCTCTTCCATTCTACTCGATCAAATCTACCGTTCCATCGACGAGGGCAACGACATGAAGCTCTACAACGAAACAATGGCGAAGCAACAGAACAGAGTCTTCGTCGAAGAAGAAGAAGAAGAAGAAGAGATAACGGCTGCCAGCATTCGCCGCGCTTGTTTGCTCGACAAATGGAAAGAAAGCGAAAAGGCTGGAAGTCAATGGAAAACACAAACGGAGGGAAAATCGCGTTGGCATCATCATCATAATCACGAACATGACCAGGAGGTTATGTTCTTCAGTTCAACTTCGAGTTCCTCGGATTCTAGTTCTGGTTTATTGTCCTCCTCTGACACGGAATCCTTGTACGGAATGAGGTCGAAATCACGAGTTTCGTGCTTTGCGCCGTCGAGGCCGAAGCCAGTGGTGACGTCAGCGAGCAACGAAGTGGGTTTAATAAAGTCAGAATCGAGGGCATTGAAGATTTACAACAACCTGAAGAAGGTGAAGCAGCCCATCTCACCGGGGGGTAAGTTAAGTAATTTTCTTAACTCTCTGTTCGCGACAGGGGGCAGCGTTAAGAAAACCAAAACCTACGACGACGACGCCAAAGCTTCCACCAAGTCGGGACAGGACTCCACGTGTTCCTCCGCTTCCTCGTTCTCGCGGTCTTGTTTGAGCAAGGCTTCGACTTCCTCTAAGGACAAATTGCGTGACGGGGTTAAGCGAACGGTGCGTTTCTACCCCGTGAGTGTGATCGTGGGCGAGGATTCTCGAGCGTGTGGGCATAAGTGTTTGTATGAAGAGGACACTCGCGTAACGGAAGTGTCCGTGCCAACCGCGTGGAAAATTGGGCGCAAGAAGAACCAAGAAGATGAAGAATTAAGGGTCGTGGATAGGAGTAGGCGCGTGGAGGAGGCTGCTAGAGAGTTCTTGAAAGAGTACCATCGAAGCCAGAAGAAGAGCGATTTTACTAATTTGGATGTGGAAGATGATGGTGATGCATCGAGTTGTTCAAGTTCGGATCTGTTCGAGCTTGATCACCTAGCGGTGATGGGAAACGATAGGTATGGTGATGAGCTTCCCGTTTACGAGACAACTTATGTTTCTACTAATCGCGCCATTGCTAATGGCCTCATATAA

Predicted protein sequences of Glyma04g05780

Limit To All Plant Sequences

>Glyma04g05780.2   sequence type=predicted peptide   gene model=Glyma04g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTTKREQQRLRFQNHAKKPSFSSILLDQIYRSIDEGNDMKLYNETMAKQQNRVFVEEEEEEEEITAASIRRACLLDKWKESEKAGSQWKTQTEGKSRWHHHHNHEHDQEVMFFSSTSSSSDSSSGLLSSSDTESLYGMRSKSRVSCFAPSRPKPVVTSASNEVGLIKSESRALKIYNNLKKVKQPISPGGKLSNFLNSLFATGGSVKKTKTYDDDAKASTKSGQDSTCSSASSFSRSCLSKASTSSKDKLRDGVKRTVRFYPVSVIVGEDSRACGHKCLYEEDTRVTEVSVPTAWKIGRKKNQEDEELRVVDRSRRVEEAAREFLKEYHRSQKKSDFTNLDVEDDGDASSCSSSDLFELDHLAVMGNDRYGDELPVYETTYVSTNRAIANGLI*

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