Glyma04g05760 - SoyBase

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Report for Sequence Feature Glyma04g05760

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4387092
stop:	4388747
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05670	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr1:1698574-1700799 REVERSE LENGTH=741	SoyBase	E_val: 1.00E-62	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_F8WLA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PPR containing protein n=1 Tax=Citrus unshiu RepID=F8WLA5_CITUN	SoyBase	E_val: 0	ISS
UniRef100_I1JU03	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU03_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g054900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05760

Limit To All Plant Sequences

>Glyma04g05760.1   sequence type=CDS   gene model=Glyma04g05760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTCAGCCATTCCGGAAAGCCATAGCGAAACCACTTTGTTCTTCATCCACAGCTCCAATCCCAAACCTCTCTCTCGTAACCTGCATCACCACAATCCTTCAAAACATAAATCCCCAAAACCCAGATTACTCACCCCTTAGAGAGTTCTCATCTCACCTCACCCCAAACTTGGTTATCCACGTGATCAAGAACCAAAACAACCCCCAGCACGCCCTTCACTTCTTCAACTGGGCCTCCAACCCCAACCCCAACCCCAACAACTACTCCCACACCCCCCTCTGCTACACCGCCATCACCGACCTCCTTCTCTCCCACTCCCTCTTCTCCACCGCCTTCTCCCTCCTCCGCCACTCCAACAGACTCTCCGACAACCTCGTCTGCAGATTCATCAACGCTCTCGGCCACCGCGGCGACATCAGGGGCGCCATTCACTGGTTCCACCAAGCTAATACCTTTACTAGAGGACGCTGTGTTTTCTCCTGCAACGCCATATTGGGCGTCCTCGTGAGGGCCAACCGTGTCAACATTGCCAAGGCCATCTACGATCAGGTTCTCGCTGAAGCTGTTTTGGAACCGGATGTTTACACCTACACCACCATGATTCGGGGGTTCTGCAAAGTGGGCAAGGTCGAGAGTGCGCGCAAGGTGTTCGATGAAATGCGCTGCGAACCCAATATAGTTACTTACAACACGTTGATCCACGGCTTTTGTAAGAAAGGTGACATGGATGGTGCCAGGAGGGTTTTTGACAGAATGGTGGAGAGTCAGAGTTGCAAGCCGGATGTCGTGAGTTTTACCACTTTGATTGATGGGTATTCGAAGAGGGGTGGATTCCAAGAGGCGCTGGAGTGCTTGAAGGAGATGGTGGAACGAGGGTGTTCCCCGAATGCTGTGACCTACAATGCTTTGGTTGAAGGTCTTTGTTTGAGCGGTGAAGTGGACGAGGCCCGGAAGATGATGAGTAGGATGCGGTTGAATGGTTTGAAAGACGATGTTGCCACAAACACTAGCTTGTTGAAGGGGTTTTGTATTGTGGGAAAGTCTGATGAGGCTGTTAAGCATTTGAGGGAAATGGTTAGTCGCGGGATGAAGCCGGATGTAAAAGCGTATGGGGTTGTTGTCAATGAGTATTGCAAGATTAGAAAACCAAGTGAAGCAGTGTTGCTTCTGAGGGAAATGGTGGTGAGGGGTGTTAAGCCAAATGTGTCAAGCTTCAATGCAGTGTTTAGAGTTCTTGTGGATGAGGGGAAGATTGATGAAGGACTTCATCTTTTGAAGCAGATGCCTAAGATGGGATGCTCGCCCAACTTCTTGTCTTATTGCACAGTGATATGTGGTCTTTGTGAAGTGAAGGGTAGGATGCAACAAGTTGAAGAGCTTGTTTCGAACATGCTTCAGAATGGACATAACCTGGATGCCACTATGTATAATTGCTTACTTCTGGGATATTGTGAAGACAGGGATGAAGAAATGGCACAAAAGACGGTTTATGACATAATGGACAAGAACTTTGTAATCAACCAAGACATTTTCTGCACTTTTGTGAAGCTGTTGTGTGCAAAGGGAAAATTGAAAGAGGCAGAGACAGTATCTGAGGAGATGCGGAGGAGATGCCAGTTGAACGGGAAAGCTGAAACAGAGGAACATTAA

Predicted protein sequences of Glyma04g05760

Limit To All Plant Sequences

>Glyma04g05760.1   sequence type=predicted peptide   gene model=Glyma04g05760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAQPFRKAIAKPLCSSSTAPIPNLSLVTCITTILQNINPQNPDYSPLREFSSHLTPNLVIHVIKNQNNPQHALHFFNWASNPNPNPNNYSHTPLCYTAITDLLLSHSLFSTAFSLLRHSNRLSDNLVCRFINALGHRGDIRGAIHWFHQANTFTRGRCVFSCNAILGVLVRANRVNIAKAIYDQVLAEAVLEPDVYTYTTMIRGFCKVGKVESARKVFDEMRCEPNIVTYNTLIHGFCKKGDMDGARRVFDRMVESQSCKPDVVSFTTLIDGYSKRGGFQEALECLKEMVERGCSPNAVTYNALVEGLCLSGEVDEARKMMSRMRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRKPSEAVLLLREMVVRGVKPNVSSFNAVFRVLVDEGKIDEGLHLLKQMPKMGCSPNFLSYCTVICGLCEVKGRMQQVEELVSNMLQNGHNLDATMYNCLLLGYCEDRDEEMAQKTVYDIMDKNFVINQDIFCTFVKLLCAKGKLKEAETVSEEMRRRCQLNGKAETEEH*

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