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Report for Sequence Feature Glyma04g05750

Feature Type:gene_model
Chromosome:Gm04
Start:4377920
stop:4379590
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20510AT Annotation by Michelle Graham. TAIR10: alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260 SoyBaseE_val: 1.00E-66ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0035064GO-mf Annotation by Michelle Graham. GO Molecular Function: methylated histone residue binding SoyBaseN/AISS
PTHR23123Panther PHD/F-BOX CONTAINING PROTEIN JGI ISS
PF00628PFAM PHD-finger JGI ISS
PF12165PFAM Domain of unknown function (DUF3594) JGI ISS
UniRef100_B9RQU2UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQU2_RICCO SoyBaseE_val: 9.00E-83ISS
UniRef100_UPI0002339692UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339692 related cluster n=1 Tax=unknown RepID=UPI0002339692 SoyBaseE_val: 4.00E-155ISS

Expression Patterns of Glyma04g05750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g054700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g05750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g05750
>Glyma04g05750.2   sequence type=CDS   gene model=Glyma04g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAGGAGGAGCTCAATCTCAACGCTACAACTACAACTACGACTACAATCCCTGCTCTGTTATCACCAGTGTGATCCAGCTTTGTGATACAAAGATGGAAAATCTTTTCCTTTATGGATTTCCTAGGGAACTGTGGGAAGTCAATGTGCCTCCAGACCTTCTAGTGCCAACATTGGGTATTAACTTTGACAGAGACGGGAAGCAAAATAAGGACTGGCTATCCTTGGTTGCTATGCACAGTGATGCATGGTTACTTTCTGTGGCTTCGTTTTTTGGTGCTAGATTTGGGAAGCAACTGTTTGATGTGATAAATGATCTTCCAACAATAAATGAGGTTGTTACAGGGATGACCAAGAAGCAAGGAAAGGAAAAGTCATCAGTTCCTAATCATAGCAAACCTAAATCAAACTCTAAGAGGGGTTCTAAACCTCAAGGGAAGTATTCGAAAGCGATGCAATCAAAGGATGAAGATGAAGATGATTTAGAAGTGGACGATGAAGAGGAGCATGGAGAAACACTTTGTGGGACATGTGGATTGAACTATGCAGGTGAAGCTTCTGAGTTCTCGATTTGCTGTGACAATTGTGACAAGTGGTTTCATGGAAAATGTGTGAAGATTACTCCTGCTAGGGTTGAGGGTATCAAGCGGTACAAATGTCCATCTTGGAGCAGCAAGAGAGCTCGACCTTGA
Predicted protein sequences of Glyma04g05750
>Glyma04g05750.2   sequence type=predicted peptide   gene model=Glyma04g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAGGAQSQRYNYNYDYNPCSVITSVIQLCDTKMENLFLYGFPRELWEVNVPPDLLVPTLGINFDRDGKQNKDWLSLVAMHSDAWLLSVASFFGARFGKQLFDVINDLPTINEVVTGMTKKQGKEKSSVPNHSKPKSNSKRGSKPQGKYSKAMQSKDEDEDDLEVDDEEEHGETLCGTCGLNYAGEASEFSICCDNCDKWFHGKCVKITPARVEGIKRYKCPSWSSKRARP*






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