Glyma04g05710 - SoyBase

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Report for Sequence Feature Glyma04g05710

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4360108
stop:	4365586
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26180	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr5:9149253-9152595 FORWARD LENGTH=567	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2360	KOG	Proliferation-associated nucleolar protein (NOL1)	JGI		ISS
PTHR22807	Panther	NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING	JGI		ISS
PTHR22807:SF4	Panther	WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN 20	JGI		ISS
PF01189	PFAM	NOL1/NOP2/sun family	JGI		ISS
UniRef100_G7J8C5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NOL1/NOP2/Sun domain family member 5B n=1 Tax=Medicago truncatula RepID=G7J8C5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTZ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05710

Paralog	Evidence	Comments
Glyma06g05730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g054300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05710

Limit To All Plant Sequences

>Glyma04g05710.1   sequence type=CDS   gene model=Glyma04g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGACGAAGAAGAGTGGCGAAGAAAATGGGGGCAAGCTCAAGTTCAAGGGCGCGGAGAGGTCAGCTTACTTCGCACGCAGAGAGGCAGCGAAGGTTTTGAAAGTGATTCTCGAAGGAGACGCCAAACGCCGCGCTCTAGCCTCCATCAAATCCCTCATTTATCAACCTTCCGTTAGAAACAAGAAGGCCACATTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATTATCAAGGATGTCTTGGAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAGGCAACGAGAATTGATTTATATCATTGTCTATGATATCCTTTTAGGCCAGGCGGTTTCACTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACCAAGATGCCCTGCGTTCAACCCTCAAACAGCTTTTGTTACAGAGAAATGTCAAGACAGTTAAACAGTTGATTGCTCTGCATCAAGTTCCTGATATTTCTGTACCTCGATATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATAATTTACTGCCTGATTTGCTGATACTCCCACCAGGAACAGATTTACATGATCATCCTCTTGTCAAGAATGGCAGTATCTTTCTGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCCCTTAGCCCTGAACCAGGCTGGGAGGTTCTTGATGCATGTGCAGCACCAGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGAAAGGGTAAGATTATTGCATGTGAGCTACAAAAAGAAAGGATTAAACGTTTGAAAGACACTATAAAGCTATCTGGTGCTTCTAACATACAAGTCCTCAATGATGATTTCTTGAACCTAAATCCCAAGGATCCTTCATACTCCAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGGACTGCTGCTTCAAGACTAGATCATCTACTCCCATCTAAAGCAGCAGGTCAGGATGCTGATATGGAAAGATTGAACAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTTGAAAGAATTGTTTATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTCATCAAATCTGTTCTGCCCATAGCCGAATCAAATGGATTTCAGTTGGCAAAGCCATTCCCTGGGTGGGAATGCCGTGGTCTTCCAGTGTTTGAAGGCTCTGAATGCTTGGTTCGGACAGATCCTGCTAAACATGGCGAGGGTTTCTTCATTGCTTTGTTTACTAGGAAAGATGCTAACTTTTCAGGGCGATCAAATAAAAATGAAACTAGAATTTCCGACAGCACTGCCGAAATTAAAAACGCGCGAAGAAAGAAGAAACGTGTACCGTTTGTTAGCACAAACCCATTCAAAACGTGGTTATATGATAGTAAAATTGTTAAGTCTTGGCGGTCGAATTGA

Predicted protein sequences of Glyma04g05710

Limit To All Plant Sequences

>Glyma04g05710.1   sequence type=predicted peptide   gene model=Glyma04g05710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKTKKSGEENGGKLKFKGAERSAYFARREAAKVLKVILEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIIKDVLEAASILNTKWKRQRELIYIIVYDILLGQAVSLVGDAEKYLMRHQDALRSTLKQLLLQRNVKTVKQLIALHQVPDISVPRYVRVNTLKLDVDSALLELQKKYSVQKDNLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKIIACELQKERIKRLKDTIKLSGASNIQVLNDDFLNLNPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQDADMERLNKLATFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFPGWECRGLPVFEGSECLVRTDPAKHGEGFFIALFTRKDANFSGRSNKNETRISDSTAEIKNARRKKKRVPFVSTNPFKTWLYDSKIVKSWRSN*

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