Glyma04g05680 - SoyBase

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Report for Sequence Feature Glyma04g05680

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4333045
stop:	4336226
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76940	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:28902707-28904085 REVERSE LENGTH=179	SoyBase	E_val: 2.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF180	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J8B6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein with multiple splicing n=1 Tax=Medicago truncatula RepID=G7J8B6_MEDTR	SoyBase	E_val: 2.00E-91	ISS
UniRef100_I1JTZ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTZ5_SOYBN	SoyBase	E_val: 4.00E-158	ISS

Expression Patterns of Glyma04g05680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05680

Paralog	Evidence	Comments
Glyma06g05690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g054000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05680

Limit To All Plant Sequences

>Glyma04g05680.2   sequence type=transcript   gene model=Glyma04g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAGTTAACGAACGAGTCGAGAGAGAGAGTGTGAAGTGTGCTTTCCAATTTCCTTTACTCATTCATAGTTTTCTTTCTTTCTCTTGTGGCCGGTGTGAGGGAGACTGAGACCGAAGCAAGAGTCGATGGCGGACCCCTACTACTCATACGGTGCTCCGGTAGGCGCTGACGGAGCTAGCATTGCAAGGAGCAGCTTTGCTGGTTATATCCCCTCTGAGCCTTCAAATTCCACTGAATTGAGGGGCATTGGATCAGATTACCTGCAGAGAGATATAGGCTTGTTTTACAGTGCTGATGATACCTTGGGCTCCAGAGTTCATTCTGAGCCTGTTAAGGGTTATTCGCCTCTTGCAGATCCTTGTCTGAGTAAAAAACGAGATACAACACCATTGGGCATTAATAATGGTGTTCCTGATGTAAGCAGTGAAAGACCAGCTTCTAAAAGCAGTTATGACGGTCTACCAATTTCGGCGGCAGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAAAGACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTGTAAGTGTGTTAATTAAGAATTTCGTGTTGACTATTTTAGAAAATTCCAGTAATGTACAATCTATCAATGTTATTATAGTTTGTCTAGGAAGGAAAAGGACTACATATGATTTCATGATTATCATGTGTTTTTAAGGAATATGATATTACTTCTCACTTGTTGCAGCATTCCTCTAGTTAGTAAATAGTAATACATTAGCTTTGACAGCCAAAAATATTTTGTGTAGAGTGTTAATCTACATTATTTCATTTTTCTTCATTTATTATGAATAACCAGTAGTTTTTAAATGACTGAGATGCTGCAGAGTGGAGACAAAGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCCAATTGTGCTCTCACTGCCCTGGAAACCCTGCAAGGCTACAAGTTTGATGATAAAAAGCCTGACTCACCAACTTTAAAAATACAGCCTGCACACTTTCCTTTCCGGCTACCATCTGATCATGGCAACAGCTTATCAACATGATACACTGACTGGACATTGATTTCTTGGGAGAGAATGTATTTGATGGTGCTCAAATGTCAGATACAGATATTCATTTTTAGTTTCCAAATTTTAGGTTAGGCCTGGCTGTTGAATATAGTATATGGATGCAAGAATTCTGGCTACAAGCCAATTTTTTAATCTAGAATATTGATTATTGCCATTGGATAATTTTCATTATTATATTTTGGCCCGTCAGTAAAGCCTCTCCAATCACCGGAGTAAGGCTGTGGCTTTGTACATTTGAGTTTTTGACCCTCTTATCTCTAACTATGGCTGGAGAATGGGAGTTTCATGTATTTGGCCTTTCATTTTAATCTTTTATGCTCTAGCAGGGAATTGTAACAATAGTTAGGACTTGTGAAAATAATAATCATCGGGTATCCCTTTGTGTGCACTACATCAATAAATCATGATGTTATATGTCATTTTTTTTCCTTCTTTCT

Coding sequences of Glyma04g05680

Limit To All Plant Sequences

>Glyma04g05680.1   sequence type=CDS   gene model=Glyma04g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGACCCCTACTACTCATACGGTGCTCCGGTAGGCGCTGACGGAGCTAGCATTGCAAGGAGCAGCTTTGCTGGTTATATCCCCTCTGAGCCTTCAAATTCCACTGAATTGAGGGGCATTGGATCAGATTACCTGCAGAGAGATATAGGCTTGTTTTACAGTGCTGATGATACCTTGGGCTCCAGAGTTCATTCTGAGCCTGTTAAGGGTTATTCGCCTCTTGCAGATCCTTGTCTGAGTAAAAAACGAGATACAACACCATTGGGCATTAATAATGGTGTTCCTGATGTAAGCAGTGAAAGACCAGCTTCTAAAAGCAGTTATGACGGTCTACCAATTTCGGCGGCAGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAAAGACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTAGTGGAGACAAAGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCCAATTGTGCTCTCACTGCCCTGGAAACCCTGCAAGGCTACAAGTTTGATGATAAAAAGCCTGACTCACCAACTTTAAAAATACAGCCTGCACACTTTCCTTTCCGGCTACCATCTGATCATGGCAACAGCTTATCAACATGA

>Glyma04g05680.2   sequence type=CDS   gene model=Glyma04g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGACCCCTACTACTCATACGGTGCTCCGGTAGGCGCTGACGGAGCTAGCATTGCAAGGAGCAGCTTTGCTGGTTATATCCCCTCTGAGCCTTCAAATTCCACTGAATTGAGGGGCATTGGATCAGATTACCTGCAGAGAGATATAGGCTTGTTTTACAGTGCTGATGATACCTTGGGCTCCAGAGTTCATTCTGAGCCTGTTAAGGGTTATTCGCCTCTTGCAGATCCTTGTCTGAGTAAAAAACGAGATACAACACCATTGGGCATTAATAATGGTGTTCCTGATGTAAGCAGTGAAAGACCAGCTTCTAAAAGCAGTTATGACGGTCTACCAATTTCGGCGGCAGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAAAGACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTGTAAGTGTGTTAATTAAGAATTTCGTGTTGACTATTTTAGAAAATTCCAGTAATGTACAATCTATCAATGTTATTATAGTTTGTCTAGGAAGGAAAAGGACTACATATGATTTCATGATTATCATGTGTTTTTAA

Predicted protein sequences of Glyma04g05680

Limit To All Plant Sequences

>Glyma04g05680.1   sequence type=predicted peptide   gene model=Glyma04g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPYYSYGAPVGADGASIARSSFAGYIPSEPSNSTELRGIGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPCLSKKRDTTPLGINNGVPDVSSERPASKSSYDGLPISAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSNCALTALETLQGYKFDDKKPDSPTLKIQPAHFPFRLPSDHGNSLST*

>Glyma04g05680.2   sequence type=predicted peptide   gene model=Glyma04g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPYYSYGAPVGADGASIARSSFAGYIPSEPSNSTELRGIGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPCLSKKRDTTPLGINNGVPDVSSERPASKSSYDGLPISAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRVSVLIKNFVLTILENSSNVQSINVIIVCLGRKRTTYDFMIIMCF*

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