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Report for Sequence Feature Glyma04g05661

Feature Type:gene_model
Chromosome:Gm04
Start:4311156
stop:4316708
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05661
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72770AT Annotation by Michelle Graham. TAIR10: homology to ABI1 | chr1:27390998-27392851 FORWARD LENGTH=511 SoyBaseE_val: 3.00E-167ISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0009610GO-bp Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0008287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0698 KOG Serine/threonine protein phosphatase JGI ISS
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI ISS
PTHR13832:SF115Panther SUBFAMILY NOT NAMED JGI ISS
PF00481PFAM Protein phosphatase 2C JGI ISS
UniRef100_G7J8B9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Abscisic insensitive 1B n=1 Tax=Medicago truncatula RepID=G7J8B9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A430UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A430 related cluster n=1 Tax=unknown RepID=UPI000233A430 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g05661
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g05661 not represented in the dataset
Glyma04g05661 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05661
ParalogEvidenceComments
Glyma06g05670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05661 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g053800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g05661
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g05661
>Glyma04g05661.1   sequence type=CDS   gene model=Glyma04g05661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGATGTCAACCACGGTTACAGTGCCATGGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTACCCACATGGATGTATCCAGAATTAAGCTGATGGCAGATGCAGGGTTGTTATCCAATTCTATAACTAAGGTTTCCGATGAAACTTTTATAGGTTCAGATGAGAATCATGACAGTGGTTGTCATGAGGATGAAATTGGTATTACAGCAGTCACAGCTCCAGAACAGCAAAGAGAAGGGGAAATTCCGATGTTGGATATGATATCCCAAAATATAAGCTCTCTGGTTGTTGGTGATGAAGTTTTAACCCCAGAAATTGAGGAGGATGATTTGATATCACTGGAAGGTGATCCAATTATTGATAGCTCTTCACTTTCAGTAGCCAGTGAACATAGTAGTATTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTCTTCAGATTTAGGGACAACAAGTTCCAAAGACATAGGAAAGAGCATCTCCACTGTCAAAATTGCAGCCAGGGCTACTGATTTGAGTATGTCAAATGTAGAGGCAGATGTGGCAGTGAGCCTTGAAGAGACAGGAGTTAGATCTGGCTCAAAGCCTACTACAGGTGTTTTTCACCAACTAACTCTGGAAAGATCTGTGAGTGGAACAGTAGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTATGGGGATTTACATCTGTGTGTGGAAAAAGGCCTGAGATGGAAGATGCAGTTGCAACTGTTCCTCGATTTTTGAAAATTCCTATTGAAATGCTAACTGGTGATAGGTTACCTGATGGAATAAACAAATGTTTCGGTCAGCAGACAATACATTTCTTTGGAGTCTATGATGGGCATGGTGGCTCTCAGGTGGCAAAGTATTGCCGTGAGCGCATGCATTTGGCCTTGGCTGAGGAAATCGAATCTGTCAAGGAAGGTCTATTAGTTGAAAATACCAAGAATGATTGTAGAGATCTGTGGAAAAACACTTTCACCAATTGTTTTTTGAAGGTTGATGCTGAAGTTGGGGGGGAAGTTAATCGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTTCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCGCTATCTGTTGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCCGCTGGAGGCAAGGTGATACAATGGAATGGTCACCGAGTATTTGGTGTTCTAGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCCGAGGTGACGTTTCTTCCTCGTGCGAAAGATGATGAATGCCTCATTCTGGCCAGTGATGGCCTGTGGGATGTCATGACCAACGAAGAGGTGTGTGACATTGCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGCTTGGCATTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCTGCAGAGTACCTATCGAACCGTGCTCTTCAGAAAGGAAGCAAAGACAACATCACTGTAATTGTGGTGGATTTGAAAGCTCAAAGAAAATTTAAGAGCAAGACTTGA
Predicted protein sequences of Glyma04g05661
>Glyma04g05661.1   sequence type=predicted peptide   gene model=Glyma04g05661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEMSTTVTVPWRVGNSVCDKPTIATHMDVSRIKLMADAGLLSNSITKVSDETFIGSDENHDSGCHEDEIGITAVTAPEQQREGEIPMLDMISQNISSLVVGDEVLTPEIEEDDLISLEGDPIIDSSSLSVASEHSSICGDEFISSEVSSDLGTTSSKDIGKSISTVKIAARATDLSMSNVEADVAVSLEETGVRSGSKPTTGVFHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDAVATVPRFLKIPIEMLTGDRLPDGINKCFGQQTIHFFGVYDGHGGSQVAKYCRERMHLALAEEIESVKEGLLVENTKNDCRDLWKNTFTNCFLKVDAEVGGEVNREPVAPETVGSTSVVAIICSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRAKDDECLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLALPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT*






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