Glyma04g05650 - SoyBase

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Report for Sequence Feature Glyma04g05650

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4306180
stop:	4309547
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01790	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr4:769868-770728 FORWARD LENGTH=167	SoyBase	E_val: 1.00E-50	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004526	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease P activity	SoyBase	N/A	ISS
KOG3387	KOG	60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing	JGI		ISS
PTHR21596	Panther	RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED	JGI		ISS
PTHR21596:SF4	Panther	RIBONUCLEASE P PROTEIN SUBUNIT P38	JGI		ISS
PF01248	PFAM	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	JGI		ISS
UniRef100_B9RN39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease P, putative n=1 Tax=Ricinus communis RepID=B9RN39_RICCO	SoyBase	E_val: 3.00E-63	ISS
UniRef100_I1LAT7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAT7_SOYBN	SoyBase	E_val: 4.00E-117	ISS

Expression Patterns of Glyma04g05650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g053700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05650

Limit To All Plant Sequences

>Glyma04g05650.4   sequence type=transcript   gene model=Glyma04g05650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATATCAGACGAACCACAATACACACACACTACGCGAATAGTTTTCAAATTTCAGTGCAATAAGCTTTCAATCTTTCTGCGGTACTCACTCCTCTCTCTCAGTCTTTCCTCAGAGGTTCTGAGAACTCCCCTCTCTAGTAACAAGGCTGACTCATCCCTCTGCATTTACTGACTCCTCTCTCTTGATCTTTTCTCAGAGGTTCCGATAACTCCGATCTTGACCCACAGTCTCATTCGCGATTTCGATCTACACTCTCGCTGTGCCACTGTGTGTTCATTTTTTTTGTTAATTTGTGATTTATTTTTTATTTAATTGATTGATTTCATTAGTGTTGTACTGTGGGCATTTTTGTAAATTTGTTAGGAAGAGACCCTCCATTTGTTGTGGGCCATCCGTGTTCCCCAGTCCAAGCCCAACTATCACAACCCAAATTATTATATAAAACGCGGCAAGAAAGAAAGTAGGGCTCTATTTCTCGTCACTCCTAAATTTCAGCGTTGAAGTGCGATTAGAACTTAGAAGCATCAATTCAAGCTCCAATCTTCGACTCTGTTAATTGTGTTGTAGTCACTTAATACATTGAAAGCAGAGTATGCCGAGTAGGAATAGTGCCAAAACTCCAAAGAATGATGGAAACAACTCAAATTCCAGTCTTGCTTCTCTAGAAAATAATTGCTATGAAGGAGAACGTCTCACCAGTCTGCTCCAATCAATCCGTAGGGGGATCCAATCTGCTAGACATTTGGATGGAAGTTCCTTGCCAGAGAAGATATGGTTAAAGCAACAATTTTCTATTGGGGTCAACGATGTAACTCGTGTCCTTGAGCGCATGAAACCATGCACGGAGTTAGAAAGCTCTACTGAACTCATCTCTTTGAGAAGCAACCATACAGCATCTTCAGTTAAGCTTCAGGCTGTGCTTGTAGCTTCTGACTGTAACCCACGTTGGCTGACGAAACATCTCCTAAGTTTGGCTTCATCAAGGAATGTGCCCCTGGTATTTGTTAGAGATACTAAACAAGGTTCTTTGAGACTAGGTGAACTTGTGCAATTAAAAACGGCCATTGCTATCGGAATTAAGGTTAAAGGAAGCACCATAAATAAAATTATTCAGCAAGTTATTCAAGGCGATAGATTTGAACTTTCACCTGAAGGGCAAAATTCAGCAAGAATATTTGATGCGCAAAGTAACTTTCAGGACCCTGACAAAAAAATGCTATCAAATGTAATTTAATCAATATTTCTTGTTTATAAAATTATTGACCTTGCATTCTAAGGTGCAGTTCTTTTTTTCCCTTGGGAGAGGGGTTAAAAATCTATTTGTAAATTTTTTTCGTTTGAGCATCATAATTTTTATTTTACCATAAATTACGACTTGCATGAAGGATTAATTGAAGCTTTTTAAGCTTTTCTAGCTTGTTATACATTTGTAAATTTGTACAACTTGTTAACCCAAATTTTAAATTTGAATGTTTTGCCGAATAGATATAGGAAGATAACTGGG

Coding sequences of Glyma04g05650

Limit To All Plant Sequences

>Glyma04g05650.3   sequence type=CDS   gene model=Glyma04g05650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAGTAGGAATAGTGCCAAAACTCCAAAGAATGATGGAAACAACTCAAATTCCAGTCTTGCTTCTCTAGAAAATAATTGCTATGAAGGAGAACGTCTCACCAGTCTGCTCCAATCAATCCGTAGGGGGATCCAATCTGCTAGACATTTGGATGGAAGTTCCTTGCCAGAGAAGATATGGTTAAAGCAACAATTTTCTATTGGGGTCAACGATGTAACTCGTGTCCTTGAGCGCATGAAACCATGCACGGAGTTAGAAAGCTCTACTGAACTCATCTCTTTGAGAAGCAACCATACAGCATCTTCAGTTAAGCTTCAGGCTGTGCTTGTAGCTTCTGACTGTAACCCACGTTGGCTGACGAAACATCTCCTAAGTTTGGCTTCATCAAGGAATGTGCCCCTGGTATTTGTTAGAGATACTAAACAAGGTTCTTTGAGACTAGGTGAACTTGTGCAATTAAAAACGGCCATTGCTATCGGAATTAAGGTTAAAGGAAGCACCATAAATAAAATTATTCAGCAAGTTATTCAAGGCGATAGATTTGAACTTTCACCTGAAGGGCAAAATTCAGCAAGAATATTTGATGCGCAAAGTAACTTTCAGGACCCTGACAAAAAAATGCTATCAAATGTAATTTAA

>Glyma04g05650.4   sequence type=CDS   gene model=Glyma04g05650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAGTAGGAATAGTGCCAAAACTCCAAAGAATGATGGAAACAACTCAAATTCCAGTCTTGCTTCTCTAGAAAATAATTGCTATGAAGGAGAACGTCTCACCAGTCTGCTCCAATCAATCCGTAGGGGGATCCAATCTGCTAGACATTTGGATGGAAGTTCCTTGCCAGAGAAGATATGGTTAAAGCAACAATTTTCTATTGGGGTCAACGATGTAACTCGTGTCCTTGAGCGCATGAAACCATGCACGGAGTTAGAAAGCTCTACTGAACTCATCTCTTTGAGAAGCAACCATACAGCATCTTCAGTTAAGCTTCAGGCTGTGCTTGTAGCTTCTGACTGTAACCCACGTTGGCTGACGAAACATCTCCTAAGTTTGGCTTCATCAAGGAATGTGCCCCTGGTATTTGTTAGAGATACTAAACAAGGTTCTTTGAGACTAGGTGAACTTGTGCAATTAAAAACGGCCATTGCTATCGGAATTAAGGTTAAAGGAAGCACCATAAATAAAATTATTCAGCAAGTTATTCAAGGCGATAGATTTGAACTTTCACCTGAAGGGCAAAATTCAGCAAGAATATTTGATGCGCAAAGTAACTTTCAGGACCCTGACAAAAAAATGCTATCAAATGTAATTTAA

Predicted protein sequences of Glyma04g05650

Limit To All Plant Sequences

>Glyma04g05650.3   sequence type=predicted peptide   gene model=Glyma04g05650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSRNSAKTPKNDGNNSNSSLASLENNCYEGERLTSLLQSIRRGIQSARHLDGSSLPEKIWLKQQFSIGVNDVTRVLERMKPCTELESSTELISLRSNHTASSVKLQAVLVASDCNPRWLTKHLLSLASSRNVPLVFVRDTKQGSLRLGELVQLKTAIAIGIKVKGSTINKIIQQVIQGDRFELSPEGQNSARIFDAQSNFQDPDKKMLSNVI*

>Glyma04g05650.4   sequence type=predicted peptide   gene model=Glyma04g05650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSRNSAKTPKNDGNNSNSSLASLENNCYEGERLTSLLQSIRRGIQSARHLDGSSLPEKIWLKQQFSIGVNDVTRVLERMKPCTELESSTELISLRSNHTASSVKLQAVLVASDCNPRWLTKHLLSLASSRNVPLVFVRDTKQGSLRLGELVQLKTAIAIGIKVKGSTINKIIQQVIQGDRFELSPEGQNSARIFDAQSNFQDPDKKMLSNVI*

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