SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01790 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:769868-770728 FORWARD LENGTH=167 | SoyBase | E_val: 1.00E-50 | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004526 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease P activity | SoyBase | N/A | ISS |
| KOG3387 | KOG | 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing | JGI | ISS | |
| PTHR21596 | Panther | RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED | JGI | ISS | |
| PTHR21596:SF4 | Panther | RIBONUCLEASE P PROTEIN SUBUNIT P38 | JGI | ISS | |
| PF01248 | PFAM | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | JGI | ISS | |
| UniRef100_B9RN39 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease P, putative n=1 Tax=Ricinus communis RepID=B9RN39_RICCO | SoyBase | E_val: 3.00E-63 | ISS |
| UniRef100_I1LAT7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAT7_SOYBN | SoyBase | E_val: 4.00E-117 | ISS |
|
Glyma04g05650 not represented in the dataset |
Glyma04g05650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g053700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g05650.4 sequence type=transcript gene model=Glyma04g05650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCATATCAGACGAACCACAATACACACACACTACGCGAATAGTTTTCAAATTTCAGTGCAATAAGCTTTCAATCTTTCTGCGGTACTCACTCCTCTCTCTCAGTCTTTCCTCAGAGGTTCTGAGAACTCCCCTCTCTAGTAACAAGGCTGACTCATCCCTCTGCATTTACTGACTCCTCTCTCTTGATCTTTTCTCAGAGGTTCCGATAACTCCGATCTTGACCCACAGTCTCATTCGCGATTTCGATCTACACTCTCGCTGTGCCACTGTGTGTTCATTTTTTTTGTTAATTTGTGATTTATTTTTTATTTAATTGATTGATTTCATTAGTGTTGTACTGTGGGCATTTTTGTAAATTTGTTAGGAAGAGACCCTCCATTTGTTGTGGGCCATCCGTGTTCCCCAGTCCAAGCCCAACTATCACAACCCAAATTATTATATAAAACGCGGCAAGAAAGAAAGTAGGGCTCTATTTCTCGTCACTCCTAAATTTCAGCGTTGAAGTGCGATTAGAACTTAGAAGCATCAATTCAAGCTCCAATCTTCGACTCTGTTAATTGTGTTGTAGTCACTTAATACATTGAAAGCAGAGTATGCCGAGTAGGAATAGTGCCAAAACTCCAAAGAATGATGGAAACAACTCAAATTCCAGTCTTGCTTCTCTAGAAAATAATTGCTATGAAGGAGAACGTCTCACCAGTCTGCTCCAATCAATCCGTAGGGGGATCCAATCTGCTAGACATTTGGATGGAAGTTCCTTGCCAGAGAAGATATGGTTAAAGCAACAATTTTCTATTGGGGTCAACGATGTAACTCGTGTCCTTGAGCGCATGAAACCATGCACGGAGTTAGAAAGCTCTACTGAACTCATCTCTTTGAGAAGCAACCATACAGCATCTTCAGTTAAGCTTCAGGCTGTGCTTGTAGCTTCTGACTGTAACCCACGTTGGCTGACGAAACATCTCCTAAGTTTGGCTTCATCAAGGAATGTGCCCCTGGTATTTGTTAGAGATACTAAACAAGGTTCTTTGAGACTAGGTGAACTTGTGCAATTAAAAACGGCCATTGCTATCGGAATTAAGGTTAAAGGAAGCACCATAAATAAAATTATTCAGCAAGTTATTCAAGGCGATAGATTTGAACTTTCACCTGAAGGGCAAAATTCAGCAAGAATATTTGATGCGCAAAGTAACTTTCAGGACCCTGACAAAAAAATGCTATCAAATGTAATTTAATCAATATTTCTTGTTTATAAAATTATTGACCTTGCATTCTAAGGTGCAGTTCTTTTTTTCCCTTGGGAGAGGGGTTAAAAATCTATTTGTAAATTTTTTTCGTTTGAGCATCATAATTTTTATTTTACCATAAATTACGACTTGCATGAAGGATTAATTGAAGCTTTTTAAGCTTTTCTAGCTTGTTATACATTTGTAAATTTGTACAACTTGTTAACCCAAATTTTAAATTTGAATGTTTTGCCGAATAGATATAGGAAGATAACTGGG
>Glyma04g05650.3 sequence type=CDS gene model=Glyma04g05650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGAGTAGGAATAGTGCCAAAACTCCAAAGAATGATGGAAACAACTCAAATTCCAGTCTTGCTTCTCTAGAAAATAATTGCTATGAAGGAGAACGTCTCACCAGTCTGCTCCAATCAATCCGTAGGGGGATCCAATCTGCTAGACATTTGGATGGAAGTTCCTTGCCAGAGAAGATATGGTTAAAGCAACAATTTTCTATTGGGGTCAACGATGTAACTCGTGTCCTTGAGCGCATGAAACCATGCACGGAGTTAGAAAGCTCTACTGAACTCATCTCTTTGAGAAGCAACCATACAGCATCTTCAGTTAAGCTTCAGGCTGTGCTTGTAGCTTCTGACTGTAACCCACGTTGGCTGACGAAACATCTCCTAAGTTTGGCTTCATCAAGGAATGTGCCCCTGGTATTTGTTAGAGATACTAAACAAGGTTCTTTGAGACTAGGTGAACTTGTGCAATTAAAAACGGCCATTGCTATCGGAATTAAGGTTAAAGGAAGCACCATAAATAAAATTATTCAGCAAGTTATTCAAGGCGATAGATTTGAACTTTCACCTGAAGGGCAAAATTCAGCAAGAATATTTGATGCGCAAAGTAACTTTCAGGACCCTGACAAAAAAATGCTATCAAATGTAATTTAA >Glyma04g05650.4 sequence type=CDS gene model=Glyma04g05650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGAGTAGGAATAGTGCCAAAACTCCAAAGAATGATGGAAACAACTCAAATTCCAGTCTTGCTTCTCTAGAAAATAATTGCTATGAAGGAGAACGTCTCACCAGTCTGCTCCAATCAATCCGTAGGGGGATCCAATCTGCTAGACATTTGGATGGAAGTTCCTTGCCAGAGAAGATATGGTTAAAGCAACAATTTTCTATTGGGGTCAACGATGTAACTCGTGTCCTTGAGCGCATGAAACCATGCACGGAGTTAGAAAGCTCTACTGAACTCATCTCTTTGAGAAGCAACCATACAGCATCTTCAGTTAAGCTTCAGGCTGTGCTTGTAGCTTCTGACTGTAACCCACGTTGGCTGACGAAACATCTCCTAAGTTTGGCTTCATCAAGGAATGTGCCCCTGGTATTTGTTAGAGATACTAAACAAGGTTCTTTGAGACTAGGTGAACTTGTGCAATTAAAAACGGCCATTGCTATCGGAATTAAGGTTAAAGGAAGCACCATAAATAAAATTATTCAGCAAGTTATTCAAGGCGATAGATTTGAACTTTCACCTGAAGGGCAAAATTCAGCAAGAATATTTGATGCGCAAAGTAACTTTCAGGACCCTGACAAAAAAATGCTATCAAATGTAATTTAA
>Glyma04g05650.3 sequence type=predicted peptide gene model=Glyma04g05650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSRNSAKTPKNDGNNSNSSLASLENNCYEGERLTSLLQSIRRGIQSARHLDGSSLPEKIWLKQQFSIGVNDVTRVLERMKPCTELESSTELISLRSNHTASSVKLQAVLVASDCNPRWLTKHLLSLASSRNVPLVFVRDTKQGSLRLGELVQLKTAIAIGIKVKGSTINKIIQQVIQGDRFELSPEGQNSARIFDAQSNFQDPDKKMLSNVI* >Glyma04g05650.4 sequence type=predicted peptide gene model=Glyma04g05650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSRNSAKTPKNDGNNSNSSLASLENNCYEGERLTSLLQSIRRGIQSARHLDGSSLPEKIWLKQQFSIGVNDVTRVLERMKPCTELESSTELISLRSNHTASSVKLQAVLVASDCNPRWLTKHLLSLASSRNVPLVFVRDTKQGSLRLGELVQLKTAIAIGIKVKGSTINKIIQQVIQGDRFELSPEGQNSARIFDAQSNFQDPDKKMLSNVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
