SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12000 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr5:3874151-3876780 REVERSE LENGTH=701 | SoyBase | E_val: 0 | ISS |
| GO:0002238 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0010093 | GO-bp | Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF740 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00582 | PFAM | Universal stress protein family | JGI | ISS | |
| UniRef100_G7J8B5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J8B5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339690 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339690 related cluster n=1 Tax=unknown RepID=UPI0002339690 | SoyBase | E_val: 0 | ISS |
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Glyma04g05600 not represented in the dataset |
Glyma04g05600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g053100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g05600.2 sequence type=transcript gene model=Glyma04g05600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCATCTTCAGAGGAGCGAGCGAGAGCGAGAGCGAGAGCGAGGCTTTTGTTCTCCCTCCTTTCCTTGTTCCTCTTCCGTCCTCCTTCGTTTCTGGTGGACGTGGACCCCACACCGGCGGCGGCACTCCCACGTTAACATACATTAATCATGTCTGTTCAACAGCCGCCATGTGCCGCCCCGCTGCAAAACACCACAATGGTGGCTGTTGACAAAGACAAAAACAGTGTTCATGCTTTCCGTTGGGCCGTTAATCACCTCGACAACCCCATCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCGTAGATGTCACCAATGTGTTTCCACCCGACGAAGAGGATGTAGCCAATATTTTCAATACCTTGCGTGGAATGTGTACCCGCAAAGCTGTCAAGATGAAAGAAGCCGTAATCGATGATAGTGATGTTGTGAGAGGACTTTTAGAGTATGCAAACAGGAATGCCATACATAGTATCGTGGTCGGTGCATCCACAAAAAACCCTTTGATAAGCCTCAAAAAATTTAAAACCTATCAGTATCAGGATATACCAACAGCCATGATCAAATCAGCCCCAGATTACTGCTCTGTGTACATAATTTCCAAATTGAAGATTGTGTCAGCTCGATCAGCGGTACGGTCAATGTCAAAAGGTTTTATGGCACCGAAACAACTTCCTGTGCAGGCATGCCCACCTAGTGAACCAGAAGGTGGATCAGTAAGGGGACAACCACCAAGAAGTAGGAGCACTTACGAAGGACCAGTAGAACCAATGAGAATACAGGCACGTGAGAGGCCAAGGAGTGCGGGTAGTATGTCAATAGACATTAACATTGATGTACACACTCATCCACGACATTGGTCAATGGATGAAAGAGAAATTGCAGGGCTTGTGACAATGGATGTGACTAAGCAAGATTCTATTCCTGATGTATCAGATTCCTTCGGGACATCAGGTCCTCAGTCCTCAAAAGAGCTTGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAATCAGGCAGAACAAATTCGTCAATGGAAAATGGAAGAGGACCGTAAGGTTGAGGTAGTTAGGTTGTCTCAAGAGGCAGCTCTTGCACTGGCAGAAAGGGAGAAGATTAGAGCCAAAGCTGCATTGGAAGCAGCTGAGGAGGCCAGGAGGAGGGCAGAACAGGATGCACAGAGAAGAAAGGATGCAGAGATGAAAGCCAGGTTAGAGGCAGAAGAGAAGGAACGTGCATTATCTGCGTTGGCTCATAACGATAACCGGTATAGAAAATACACTATAGTGGAGATTGAAGCAGCCACAGAAAAGTTCTACCCATTAAACAAAATTGGTGAAGGTGGATATGGACCTGTGTATAAAGGCCACCTTGATCACACCCCAGTTGCAATCAAAATTTTAAGGCCTGATGCTGTTCATGGCATGAAGCAGTTCCAACAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTCGGTGCATGTCCTGAGCATGGGTGCTTGGTGTATGAATACATGGATAATGGAAGCTTAGAAGATAGATTATACCGAAAAAATAACAGCAGGCCAATTTCATGGAGGAAACGGTTCCAAATAGCTGCTGAGATTGCAACTGCACTCCTCTTCTTACACCAAAACAAGCCAGAGCCTATTGTGCACAGAGACCTTAAACCATCAAACATTCTCTTGGACAGGAATTACGTGAGTAAAATCAGTGACGTTGGTCTGGCACGGTTAGTCCCCGCTTCTGTAGCTGATACTATGACACAATATTACATGACTTCCGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAAACGGGAATACTAACAACAAAGTCAGATGTATATTCTCTGGGGATAATGCTACTGCAGATAATCACAGCCAAGCCTCCCATGGGACTTGCTCACATAGTTAAGAAGGCAATTGAAAAGGGTAGGTTTGAAGAGATTCTTGACCCTGTGGTCACTGATTGGCCAGTGGAAGAGGCTCTATCATTTGCCAAATTACCATTGAAGTGCTCAGAACTCAGCAAGAAGGACAGGCCAAACCTTGCAACAGTTGTGTTGCCAGAGCTTAATAGGTTAAGCGAACTTGAATTGACTTTACACAATGATCAAGTTTTTTACAGTAGTGAAGGTATGATCAATAGCTATGCCGCTTGCCCTCCCACACCTCCAAGAAGTCATTACTCTGACTCAGAGACGTTATATACGATCTAGCCATCTAAGTTCGTGTATGGACTTACTCATCATGTACAAAACAATCATAATGTAATCCATGCAATTCAAATTGTTCAAGAATTTTCAACTGAAAGGAGTCAAAATCAAGACACCAATACATGGTTTCTAGAATTCTTTCCAGTTGGAAATCTTTTTTTCCCTTAACAATTGTAATTTTTCATATGATTTTGAGTAACTAGCTAGGAGGTAATATCTAAGGATGGTGTTGGGGAATTTAAAGCTACTCCAAGAAAGGAATATTGCAGCTGTTAAAGATGGAAGATGACAGACTAAGAGCACCAAAATTCAGAAAACGAATCCATGAAGCAAAAAGAAATCAAATTATAAATTATTCAACTTGGAAAATGAAGCATGTCTATTGTATAAATTCTCTATCAATTTTCTTTCACAAACAATGATGTGTGGGAAGTTCGTTCATGTGTTGTCATAATGTCGCACCTTACATCATACTCAACTTTGTAAGAATTTGCAAGAACTTTAAGTGAAAAGGAAGCTCAGAATTTCCGCTTGCAAAGAAAAGTATAAGAAGATCAAGATAAAGAGATGAATTATGCTTGGAGCTTGGTATAAGAAAAAGAGAGAGATTACTAAAGAAGCGTTGCTTTGGATTCCCTTACCATGAAAATGAAAAGGGTGCAAATCTCATTGTCCAAAGTCCTAACTCCGCTGATACAGTAAGTTTTTTAATTTATCACTTCGGCTGGTGTATTTTTGTCATTATCCTATGGTAATGAGTTATGACTTATGGGTCCCCTTATCCTCTCATTATATTCATGGTATCTAAATATGAAATTGATTATAATAGTAACTCCAGAGGTAAGGAGGTCCAAAAGGTGACAATTATGAAGTCAAAATTGGTTGAATTTTTTAACAAGCATGATTTCTTTGAGGTGGAGGATTCAGAAAATTGTGGACTTTTGACTTCGTGATTTTATCATGATGTCGTGTCTCTGTGTTTGTTATCAGATTAAAATATAAAGAAGAA
>Glyma04g05600.1 sequence type=CDS gene model=Glyma04g05600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGTTCAACAGCCGCCATGTGCCGCCCCGCTGCAAAACACCACAATGGTGGCTGTTGACAAAGACAAAAACAGTGTTCATGCTTTCCGTTGGGCCGTTAATCACCTCGACAACCCCATCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCATGTCACCAATGTGTTTCCACCCGACGAAGAGGATGTAGCCAATATTTTCAATACCTTGCGTGGAATGTGTACCCGCAAAGCTGTCAAGATGAAAGAAGCCGTAATCGATGATAGTGATGTTGTGAGAGGACTTTTAGAGTATGCAAACAGGAATGCCATACATAGTATCGTGGTCGGTGCATCCACAAAAAACCCTTTGATAAGCCTCAAAAAATTTAAAACCTATCAGTATCAGGATATACCAACAGCCATGATCAAATCAGCCCCAGATTACTGCTCTGTGTACATAATTTCCAAATTGAAGATTGTGTCAGCTCGATCAGCGGTACGGTCAATGTCAAAAGGTTTTATGGCACCGAAACAACTTCCTGTGCAGGCATGCCCACCTAGTGAACCAGAAGGTGGATCAGTAAGGGGACAACCACCAAGAAGTAGGAGCACTTACGAAGGACCAGTAGAACCAATGAGAATACAGGCACGTGAGAGGCCAAGGAGTGCGGGTAGTATGTCAATAGACATTAACATTGATGTACACACTCATCCACGACATTGGTCAATGGATGAAAGAGAAATTGCAGGGCTTGTGACAATGGATGTGACTAAGCAAGATTCTATTCCTGATGTATCAGATTCCTTCGGGACATCAGGTCCTCAGTCCTCAAAAGAGCTTGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAATCAGGCAGAACAAATTCGTCAATGGAAAATGGAAGAGGACCGTAAGGTTGAGGTAGTTAGGTTGTCTCAAGAGGCAGCTCTTGCACTGGCAGAAAGGGAGAAGATTAGAGCCAAAGCTGCATTGGAAGCAGCTGAGGAGGCCAGGAGGAGGGCAGAACAGGATGCACAGAGAAGAAAGGATGCAGAGATGAAAGCCAGGTTAGAGGCAGAAGAGAAGGAACGTGCATTATCTGCGTTGGCTCATAACGATAACCGGTATAGAAAATACACTATAGTGGAGATTGAAGCAGCCACAGAAAAGTTCTACCCATTAAACAAAATTGGTGAAGGTGGATATGGACCTGTGTATAAAGGCCACCTTGATCACACCCCAGTTGCAATCAAAATTTTAAGGCCTGATGCTGTTCATGGCATGAAGCAGTTCCAACAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTCGGTGCATGTCCTGAGCATGGGTGCTTGGTGTATGAATACATGGATAATGGAAGCTTAGAAGATAGATTATACCGAAAAAATAACAGCAGGCCAATTTCATGGAGGAAACGGTTCCAAATAGCTGCTGAGATTGCAACTGCACTCCTCTTCTTACACCAAAACAAGCCAGAGCCTATTGTGCACAGAGACCTTAAACCATCAAACATTCTCTTGGACAGGAATTACGTGAGTAAAATCAGTGACGTTGGTCTGGCACGGTTAGTCCCCGCTTCTGTAGCTGATACTATGACACAATATTACATGACTTCCGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAAACGGGAATACTAACAACAAAGTCAGATGTATATTCTCTGGGGATAATGCTACTGCAGATAATCACAGCCAAGCCTCCCATGGGACTTGCTCACATAGTTAAGAAGGCAATTGAAAAGGGTAGGTTTGAAGAGATTCTTGACCCTGTGGTCACTGATTGGCCAGTGGAAGAGGCTCTATCATTTGCCAAATTACCATTGAAGTGCTCAGAACTCAGCAAGAAGGACAGGCCAAACCTTGCAACAGTTGTGTTGCCAGAGCTTAATAGGTTAAGCGAACTTGAATTGACTTTACACAATGATCAAGTTTTTTACAGTAGTGAAGGTATGATCAATAGCTATGCCGCTTGCCCTCCCACACCTCCAAGAAGTCATTACTCTGACTCAGAGACGTTATATACGATCTAG >Glyma04g05600.2 sequence type=CDS gene model=Glyma04g05600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTCCGTTGGGCCGTTAATCACCTCGACAACCCCATCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCGTAGATGTCACCAATGTGTTTCCACCCGACGAAGAGGATGTAGCCAATATTTTCAATACCTTGCGTGGAATGTGTACCCGCAAAGCTGTCAAGATGAAAGAAGCCGTAATCGATGATAGTGATGTTGTGAGAGGACTTTTAGAGTATGCAAACAGGAATGCCATACATAGTATCGTGGTCGGTGCATCCACAAAAAACCCTTTGATAAGCCTCAAAAAATTTAAAACCTATCAGTATCAGGATATACCAACAGCCATGATCAAATCAGCCCCAGATTACTGCTCTGTGTACATAATTTCCAAATTGAAGATTGTGTCAGCTCGATCAGCGGTACGGTCAATGTCAAAAGGTTTTATGGCACCGAAACAACTTCCTGTGCAGGCATGCCCACCTAGTGAACCAGAAGGTGGATCAGTAAGGGGACAACCACCAAGAAGTAGGAGCACTTACGAAGGACCAGTAGAACCAATGAGAATACAGGCACGTGAGAGGCCAAGGAGTGCGGGTAGTATGTCAATAGACATTAACATTGATGTACACACTCATCCACGACATTGGTCAATGGATGAAAGAGAAATTGCAGGGCTTGTGACAATGGATGTGACTAAGCAAGATTCTATTCCTGATGTATCAGATTCCTTCGGGACATCAGGTCCTCAGTCCTCAAAAGAGCTTGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAATCAGGCAGAACAAATTCGTCAATGGAAAATGGAAGAGGACCGTAAGGTTGAGGTAGTTAGGTTGTCTCAAGAGGCAGCTCTTGCACTGGCAGAAAGGGAGAAGATTAGAGCCAAAGCTGCATTGGAAGCAGCTGAGGAGGCCAGGAGGAGGGCAGAACAGGATGCACAGAGAAGAAAGGATGCAGAGATGAAAGCCAGGTTAGAGGCAGAAGAGAAGGAACGTGCATTATCTGCGTTGGCTCATAACGATAACCGGTATAGAAAATACACTATAGTGGAGATTGAAGCAGCCACAGAAAAGTTCTACCCATTAAACAAAATTGGTGAAGGTGGATATGGACCTGTGTATAAAGGCCACCTTGATCACACCCCAGTTGCAATCAAAATTTTAAGGCCTGATGCTGTTCATGGCATGAAGCAGTTCCAACAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTCGGTGCATGTCCTGAGCATGGGTGCTTGGTGTATGAATACATGGATAATGGAAGCTTAGAAGATAGATTATACCGAAAAAATAACAGCAGGCCAATTTCATGGAGGAAACGGTTCCAAATAGCTGCTGAGATTGCAACTGCACTCCTCTTCTTACACCAAAACAAGCCAGAGCCTATTGTGCACAGAGACCTTAAACCATCAAACATTCTCTTGGACAGGAATTACGTGAGTAAAATCAGTGACGTTGGTCTGGCACGGTTAGTCCCCGCTTCTGTAGCTGATACTATGACACAATATTACATGACTTCCGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAAACGGGAATACTAACAACAAAGTCAGATGTATATTCTCTGGGGATAATGCTACTGCAGATAATCACAGCCAAGCCTCCCATGGGACTTGCTCACATAGTTAAGAAGGCAATTGAAAAGGGTAGGTTTGAAGAGATTCTTGACCCTGTGGTCACTGATTGGCCAGTGGAAGAGGCTCTATCATTTGCCAAATTACCATTGAAGTGCTCAGAACTCAGCAAGAAGGACAGGCCAAACCTTGCAACAGTTGTGTTGCCAGAGCTTAATAGGTTAAGCGAACTTGAATTGACTTTACACAATGATCAAGTTTTTTACAGTAGTGAAGGTATGATCAATAGCTATGCCGCTTGCCCTCCCACACCTCCAAGAAGTCATTACTCTGACTCAGAGACGTTATATACGATCTAG
>Glyma04g05600.1 sequence type=predicted peptide gene model=Glyma04g05600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVQQPPCAAPLQNTTMVAVDKDKNSVHAFRWAVNHLDNPIIIAVHVKHKNFSHHVTNVFPPDEEDVANIFNTLRGMCTRKAVKMKEAVIDDSDVVRGLLEYANRNAIHSIVVGASTKNPLISLKKFKTYQYQDIPTAMIKSAPDYCSVYIISKLKIVSARSAVRSMSKGFMAPKQLPVQACPPSEPEGGSVRGQPPRSRSTYEGPVEPMRIQARERPRSAGSMSIDINIDVHTHPRHWSMDEREIAGLVTMDVTKQDSIPDVSDSFGTSGPQSSKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKMEEDRKVEVVRLSQEAALALAEREKIRAKAALEAAEEARRRAEQDAQRRKDAEMKARLEAEEKERALSALAHNDNRYRKYTIVEIEAATEKFYPLNKIGEGGYGPVYKGHLDHTPVAIKILRPDAVHGMKQFQQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYMDNGSLEDRLYRKNNSRPISWRKRFQIAAEIATALLFLHQNKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPASVADTMTQYYMTSAAGTFCYIDPEYQQTGILTTKSDVYSLGIMLLQIITAKPPMGLAHIVKKAIEKGRFEEILDPVVTDWPVEEALSFAKLPLKCSELSKKDRPNLATVVLPELNRLSELELTLHNDQVFYSSEGMINSYAACPPTPPRSHYSDSETLYTI* >Glyma04g05600.2 sequence type=predicted peptide gene model=Glyma04g05600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSVGPLITSTTPSSLPSMSSTKTFLIVDVTNVFPPDEEDVANIFNTLRGMCTRKAVKMKEAVIDDSDVVRGLLEYANRNAIHSIVVGASTKNPLISLKKFKTYQYQDIPTAMIKSAPDYCSVYIISKLKIVSARSAVRSMSKGFMAPKQLPVQACPPSEPEGGSVRGQPPRSRSTYEGPVEPMRIQARERPRSAGSMSIDINIDVHTHPRHWSMDEREIAGLVTMDVTKQDSIPDVSDSFGTSGPQSSKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKMEEDRKVEVVRLSQEAALALAEREKIRAKAALEAAEEARRRAEQDAQRRKDAEMKARLEAEEKERALSALAHNDNRYRKYTIVEIEAATEKFYPLNKIGEGGYGPVYKGHLDHTPVAIKILRPDAVHGMKQFQQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYMDNGSLEDRLYRKNNSRPISWRKRFQIAAEIATALLFLHQNKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPASVADTMTQYYMTSAAGTFCYIDPEYQQTGILTTKSDVYSLGIMLLQIITAKPPMGLAHIVKKAIEKGRFEEILDPVVTDWPVEEALSFAKLPLKCSELSKKDRPNLATVVLPELNRLSELELTLHNDQVFYSSEGMINSYAACPPTPPRSHYSDSETLYTI*
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