Glyma04g05560 - SoyBase

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Report for Sequence Feature Glyma04g05560

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4221230
stop:	4225907
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11960	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF803) \| chr5:3858852-3861462 REVERSE LENGTH=344	SoyBase	E_val: 3.00E-173	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2922	KOG	Uncharacterized conserved protein	JGI		ISS
PF05653	PFAM	Protein of unknown function (DUF803)	JGI		ISS
UniRef100_I1JTY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTY2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05560

Paralog	Evidence	Comments
Glyma06g05570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g052700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05560

Limit To All Plant Sequences

>Glyma04g05560.2   sequence type=transcript   gene model=Glyma04g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATAATAGATTTTAATTTTAATCATAATATAATTTTATTAATTTATACATTAAAACATAACAGTGGTTTTAATTTTGTAATCACTCCTCTGAAAACCGTTTAAAGAATGATAGTATTGAATAAATAATTAATCACAATTAACAAATCCTCGAAACAAAACAAAAACTGGGGCGGGCACGAAGAGCAGAGGGAGGAAGAAAGGGTCGAAGAGAATGTGGGAATCAATTGTTTTGACGGTGGTTGCCACCGCCGGCAACAACATCGGCAAAATCCTTCAGAAGAAGGGCACCGTCATTCTTCCCCCTCTCTCTTTCAAGCTCAAGGTCATAAGGGCATATGCTTTGAACAAAACCTGGGTGATAGGTTTTCTAATGGATATATTTGGGGCACTGTTGATGTTAAGGGCATTAGCTCTTGCGCCTGTCTCTGTCATCCAACCAGTTTCTGGCTGTGGACTGGCAATTCTCTCAGTCTTTTCTCATTTTTATCTCAAAGAAGTCATGAATGTTGTTGATTGGGTGGGCATTACCTTGGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGCTGCTGCTCTATCTATTTTCCACATACCATGGCTGGCATTTGTTGTTTTCATCTTGTTTATAATGCTTAATGGATGGCTTCGTATATTCAAACGTAATCGAAGAGAACAAGAGATGATGGAATATGATGTTGTTGAGGAAATTATTTACGGCTTGGAATCTGGAATTTTGTTTGGGATGGCATCTGTAATATCAAAGATGGGGTTTCTGTTCTTGGAGCAAGGCTTCCCCAAGCTGTTGGTTCCTATTTGCATCATCATAAGTGTCTGTTCAAGTGGTACAGGCTTTTACTACCAGACACGTGGTCTAAAACATGGGAGGGCTATTGTAGTTTCTACATGTGCCGCAGTGGCATCTATTTTGACTGGTGTACTTGCTGGGATGCTTGCTTTGGGCTACTTATTATTGTTGGCGTGATTTTACTTGTTGGTTCAACAAAGCTAGTGAGATTCTTTCGATTTTCTTCACACCACTTTAAAAGAAGCAGCGTTGATAAGAATTATGGCCCTAGAAGATCTGGAACTTCCCGTGTTAGGGAACCTAGCCCAACTGCTGTCATTCAAGCGGCTACCTTAAATCATTTACTCTCATCATCTTCCAAAGAAAAAGCTTGATTTGACTTGAGCTGGAAAATGATCCTTCATCCATTCTCAGGATTCACCCTCACCCCTTAAAGAAGAAGACCCCTTTTGTAAGGCTAGATTGTTTGTGTACAGTGGTTGCTTTATCAGAGGGCATGAATTTTTAGGGATCGTTCCTTCCGACTCACGTATTTTGCGTGAAAAATCATTATCTTTTCTGATGCCACTTGTATAATTCATGAACTTCCAATATTTCTCGATATTGTATATGAAGATGGTATAGCAAGATGCTGAATGCTAGCATTGCATGGAAACAAATTGCAGGGTGCAGTGCAGAACAATTTATTCCTAATTTCCTATGCTAATGTAGTAGCAGTGTTCTTTGAGATTAGGTCTGATTTCTGTTACCAAGTAATACGAGAAGGCTGTACTTTATCCTCTCCGTTGAAGGGAAATATAATGGAAAGTTTACTATTTGACATTTCAAAAGTGAGAGGTATATTATATTTCCTTTTAATTTAAAGTTAAGATTGAGATATTTTAATCGAAATTCTTAACCTTTTACTTTACAAA

Coding sequences of Glyma04g05560

Limit To All Plant Sequences

>Glyma04g05560.1   sequence type=CDS   gene model=Glyma04g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGAATCAATTGTTTTGACGGTGGTTGCCACCGCCGGCAACAACATCGGCAAAATCCTTCAGAAGAAGGGCACCGTCATTCTTCCCCCTCTCTCTTTCAAGCTCAAGGTCATAAGGGCATATGCTTTGAACAAAACCTGGGTGATAGGTTTTCTAATGGATATATTTGGGGCACTGTTGATGTTAAGGGCATTAGCTCTTGCGCCTGTCTCTGTCATCCAACCAGTTTCTGGCTGTGGACTGGCAATTCTCTCAGTCTTTTCTCATTTTTATCTCAAAGAAGTCATGAATGTTGTTGATTGGGTGGGCATTACCTTGGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGCTGCTGCTCTATCTATTTTCCACATACCATGGCTGGCATTTGTTGTTTTCATCTTGTTTATAATGCTTAATGGATGGCTTCGTATATTCAAACGTAATCGAAGAGAACAAGAGATGATGGAATATGATGTTGTTGAGGAAATTATTTACGGCTTGGAATCTGGAATTTTGTTTGGGATGGCATCTGTAATATCAAAGATGGGGTTTCTGTTCTTGGAGCAAGGCTTCCCCAAGCTGTTGGTTCCTATTTGCATCATCATAAGTGTCTGTTCAAGTGGTACAGGCTTTTACTACCAGACACGTGGTCTAAAACATGGGAGGGCTATTGTAGTTTCTACATGTGCCGCAGTGGCATCTATTTTGACTGGTGTACTTGCTGGGATGCTTGCTTTGGGTGAGCGACTCCCTTCGGCCCCAAAAGCTCGCTTTTTACTTCTTCTTGGATGGCTACTTATTATTGTTGGCGTGATTTTACTTGTTGGTTCAACAAAGCTAGTGAGATTCTTTCGATTTTCTTCACACCACTTTAAAAGAAGCAGCGTTGATAAGAATTATGGCCCTAGAAGATCTGGAACTTCCCGTGTTAGGGAACCTAGCCCAACTGCTGTCATTCAAGCGGCTACCTTAAATCATTTACTCTCATCATCTTCCAAAGAAAAAGCTTGA

>Glyma04g05560.2   sequence type=CDS   gene model=Glyma04g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGAATCAATTGTTTTGACGGTGGTTGCCACCGCCGGCAACAACATCGGCAAAATCCTTCAGAAGAAGGGCACCGTCATTCTTCCCCCTCTCTCTTTCAAGCTCAAGGTCATAAGGGCATATGCTTTGAACAAAACCTGGGTGATAGGTTTTCTAATGGATATATTTGGGGCACTGTTGATGTTAAGGGCATTAGCTCTTGCGCCTGTCTCTGTCATCCAACCAGTTTCTGGCTGTGGACTGGCAATTCTCTCAGTCTTTTCTCATTTTTATCTCAAAGAAGTCATGAATGTTGTTGATTGGGTGGGCATTACCTTGGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGCTGCTGCTCTATCTATTTTCCACATACCATGGCTGGCATTTGTTGTTTTCATCTTGTTTATAATGCTTAATGGATGGCTTCGTATATTCAAACGTAATCGAAGAGAACAAGAGATGATGGAATATGATGTTGTTGAGGAAATTATTTACGGCTTGGAATCTGGAATTTTGTTTGGGATGGCATCTGTAATATCAAAGATGGGGTTTCTGTTCTTGGAGCAAGGCTTCCCCAAGCTGTTGGTTCCTATTTGCATCATCATAAGTGTCTGTTCAAGTGGTACAGGCTTTTACTACCAGACACGTGGTCTAAAACATGGGAGGGCTATTGTAGTTTCTACATGTGCCGCAGTGGCATCTATTTTGACTGGTGTACTTGCTGGGATGCTTGCTTTGGGCTACTTATTATTGTTGGCGTGA

Predicted protein sequences of Glyma04g05560

Limit To All Plant Sequences

>Glyma04g05560.1   sequence type=predicted peptide   gene model=Glyma04g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWVIGFLMDIFGALLMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTIGVGAGGEEQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGILFGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTCAAVASILTGVLAGMLALGERLPSAPKARFLLLLGWLLIIVGVILLVGSTKLVRFFRFSSHHFKRSSVDKNYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA*

>Glyma04g05560.2   sequence type=predicted peptide   gene model=Glyma04g05560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWVIGFLMDIFGALLMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTIGVGAGGEEQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGILFGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTCAAVASILTGVLAGMLALGYLLLLA*

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