Report for Sequence Feature Glyma04g05550
Feature Type: gene_model
Chromosome: Gm04
Start: 4212964
stop: 4215951
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g05550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G11950 AT
Annotation by Michelle Graham. TAIR10: Putative lysine decarboxylase family protein | chr5:3855072-3856815 FORWARD LENGTH=216
SoyBase E_val: 7.00E-123 ISS
GO:0009089 GO-bp
Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0042803 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity
SoyBase N/A ISS
PF03641 PFAM
Possible lysine decarboxylase
JGI ISS
UniRef100_C6T0I5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T0I5_SOYBN
SoyBase E_val: 3.00E-166 ISS
UniRef100_G7I9V5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Lysine decarboxylase-like protein n=1 Tax=Medicago truncatula RepID=G7I9V5_MEDTR
SoyBase E_val: 6.00E-132 ISS
Expression Patterns of Glyma04g05550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g05550
Paralog Evidence Comments
Glyma06g05560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g05550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g052600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g05550
Transcripts of Glyma04g05550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g05550.2 sequence type=transcript gene model=Glyma04g05550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AACAACCCTAAAATTCACTATTCTTTGGCATGGTCAATTAATAGTACTGTGTACATTAAAGTTTACAAAGCCGACAAAAAGACGTAGGATTGGAAAAGAAATAAGAGCATGTTGTGGGGTGGGCGTGGTTTGCTCACAAAAAATGAGTCCCCGTCTCATCGATGATTTCTCTTACGTGCTCTATTTGTCTATTTAGGATCACCCCTTCAAAGAAAGTTTCTGGCTTTTCTTCGTAGCTCCTAAAAGTTATTAAAGTAAAAGCACAATATTATATATAATCTTGGTACGCGTTAAGCCTTGCCCTTTTTTTTTTCTTTCTTCTTTTGTTTCAATGAATGGTTTTCGTTTGAATTGAAAACCTGCAAAGAAAGCATCGATTTTGAATGGAGGAAGGGTACCCCAGAAGCAAGTTCAAGACCGTGTGTGTCTTCTGTGGCAGCAACAGTGGCAACCGACAAGTCTTCGGTGACGCTGCGATTCAATTGGGCAATGAACTGGTTCATCATTTTCTTTTGCATCATTCTACAATCCTATTCTGTTCTTCAATCTTTTTCACCATAAAAAGGATTTTTATATGGTCTCAGAGCACCTCCTCTGTGTTGCTTTCTTCACTTTTGATGTATTCTGTTCTGCATAACGTAAAGGAACACTTGTTTTCTATGATGATACTTGATGATGAATTTGTTTAGTTTGTTAAAGAACACTTTTCGTTTTTCGGGGTGCGTTTATTTTTTTGGTTGGTTTAACAATTTTGTATGAATGCATTTTGTGCCCTGCATACACAGAGTGAAGAATTCTTCATCATCATTATTTTGTTTTTTGTTTTTTTATATCTAGTATTATATGGTGTGAATTGCAGGTTAAGAGGAACATAGACTTGGTGTATGGTGGGGGCAGTGTTGGGCTGATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAGCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGTTTCATTAAGCCTTGTGCACGGAATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAAGGTTTTTCTCCGAAAATTGATTTATGATGTGATTCTTCATCATTTGAGATGTATACAAGAGCCTGGATAGATGGGACCATATGTTGTTTGTTACCGTGTACTATGTTGTTTTATGACTGGAGTGCTTATATATTGGCTTTGCTGCTTTTCATCATTTTCTTTTCTTTATTTTTCCTCCCCTTCATTTAATGGTCAATTGATTCCCTGTGAGATAGTCATATCTGGTTGTTACCACTCATTAAAGGCAAAAGTACTTGGAAATGGAAAGAGATGATAAGCATTTCGTGAGCAGAATTTCAGTTGTGCGTAATGGGTTGGCTCCACTTTGTAGTGCCTTAATTAGACAAGATAGGTTAATCAAGGACAACCTACA
Coding sequences of Glyma04g05550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g05550.1 sequence type=CDS gene model=Glyma04g05550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGAAGGGTACCCCAGAAGCAAGTTCAAGACCGTGTGTGTCTTCTGTGGCAGCAACAGTGGCAACCGACAAGTCTTCGGTGACGCTGCGATTCAATTGGGCAATGAACTGGTTAAGAGGAACATAGACTTGGTGTATGGTGGGGGCAGTGTTGGGCTGATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAGCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGTTTCATTAAGCCTTGTGCACGGAATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAAGGTTTTTCTCCGAAAATTGA
>Glyma04g05550.2 sequence type=CDS gene model=Glyma04g05550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAGCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGTTTCATTAAGCCTTGTGCACGGAATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAAGGTTTTTCTCCGAAAATTGA
Predicted protein sequences of Glyma04g05550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g05550.1 sequence type=predicted peptide gene model=Glyma04g05550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEGYPRSKFKTVCVFCGSNSGNRQVFGDAAIQLGNELVKRNIDLVYGGGSVGLMGLISQRVYDGGCHVLGIIPKALMPLEISGETVGEVRIVSDMHERKAAMAQEADAFVALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNCLLALFDNGVKEGFIKPCARNIVVSATSAKELMMKMEHYTPSHEHVAPHQSWQMKQLGNIQMQSETVIDGRFFSEN*
>Glyma04g05550.2 sequence type=predicted peptide gene model=Glyma04g05550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLISQRVYDGGCHVLGIIPKALMPLEISGETVGEVRIVSDMHERKAAMAQEADAFVALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNCLLALFDNGVKEGFIKPCARNIVVSATSAKELMMKMEHYTPSHEHVAPHQSWQMKQLGNIQMQSETVIDGRFFSEN*