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Report for Sequence Feature Glyma04g05550

Feature Type:gene_model
Chromosome:Gm04
Start:4212964
stop:4215951
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11950AT Annotation by Michelle Graham. TAIR10: Putative lysine decarboxylase family protein | chr5:3855072-3856815 FORWARD LENGTH=216 SoyBaseE_val: 7.00E-123ISS
GO:0009089GO-bp Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
PF03641PFAM Possible lysine decarboxylase JGI ISS
UniRef100_C6T0I5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T0I5_SOYBN SoyBaseE_val: 3.00E-166ISS
UniRef100_G7I9V5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysine decarboxylase-like protein n=1 Tax=Medicago truncatula RepID=G7I9V5_MEDTR SoyBaseE_val: 6.00E-132ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma06g05560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g052600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g05550.2   sequence type=transcript   gene model=Glyma04g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAACCCTAAAATTCACTATTCTTTGGCATGGTCAATTAATAGTACTGTGTACATTAAAGTTTACAAAGCCGACAAAAAGACGTAGGATTGGAAAAGAAATAAGAGCATGTTGTGGGGTGGGCGTGGTTTGCTCACAAAAAATGAGTCCCCGTCTCATCGATGATTTCTCTTACGTGCTCTATTTGTCTATTTAGGATCACCCCTTCAAAGAAAGTTTCTGGCTTTTCTTCGTAGCTCCTAAAAGTTATTAAAGTAAAAGCACAATATTATATATAATCTTGGTACGCGTTAAGCCTTGCCCTTTTTTTTTTCTTTCTTCTTTTGTTTCAATGAATGGTTTTCGTTTGAATTGAAAACCTGCAAAGAAAGCATCGATTTTGAATGGAGGAAGGGTACCCCAGAAGCAAGTTCAAGACCGTGTGTGTCTTCTGTGGCAGCAACAGTGGCAACCGACAAGTCTTCGGTGACGCTGCGATTCAATTGGGCAATGAACTGGTTCATCATTTTCTTTTGCATCATTCTACAATCCTATTCTGTTCTTCAATCTTTTTCACCATAAAAAGGATTTTTATATGGTCTCAGAGCACCTCCTCTGTGTTGCTTTCTTCACTTTTGATGTATTCTGTTCTGCATAACGTAAAGGAACACTTGTTTTCTATGATGATACTTGATGATGAATTTGTTTAGTTTGTTAAAGAACACTTTTCGTTTTTCGGGGTGCGTTTATTTTTTTGGTTGGTTTAACAATTTTGTATGAATGCATTTTGTGCCCTGCATACACAGAGTGAAGAATTCTTCATCATCATTATTTTGTTTTTTGTTTTTTTATATCTAGTATTATATGGTGTGAATTGCAGGTTAAGAGGAACATAGACTTGGTGTATGGTGGGGGCAGTGTTGGGCTGATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAGCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGTTTCATTAAGCCTTGTGCACGGAATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAAGGTTTTTCTCCGAAAATTGATTTATGATGTGATTCTTCATCATTTGAGATGTATACAAGAGCCTGGATAGATGGGACCATATGTTGTTTGTTACCGTGTACTATGTTGTTTTATGACTGGAGTGCTTATATATTGGCTTTGCTGCTTTTCATCATTTTCTTTTCTTTATTTTTCCTCCCCTTCATTTAATGGTCAATTGATTCCCTGTGAGATAGTCATATCTGGTTGTTACCACTCATTAAAGGCAAAAGTACTTGGAAATGGAAAGAGATGATAAGCATTTCGTGAGCAGAATTTCAGTTGTGCGTAATGGGTTGGCTCCACTTTGTAGTGCCTTAATTAGACAAGATAGGTTAATCAAGGACAACCTACA

>Glyma04g05550.1   sequence type=CDS   gene model=Glyma04g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGGGTACCCCAGAAGCAAGTTCAAGACCGTGTGTGTCTTCTGTGGCAGCAACAGTGGCAACCGACAAGTCTTCGGTGACGCTGCGATTCAATTGGGCAATGAACTGGTTAAGAGGAACATAGACTTGGTGTATGGTGGGGGCAGTGTTGGGCTGATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAGCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGTTTCATTAAGCCTTGTGCACGGAATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAAGGTTTTTCTCCGAAAATTGA

>Glyma04g05550.2   sequence type=CDS   gene model=Glyma04g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAGCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGTTTCATTAAGCCTTGTGCACGGAATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAGCACTACACTCCTTCGCACGAACATGTTGCCCCTCATCAGAGCTGGCAGATGAAACAATTAGGTAATATCCAGATGCAGAGTGAGACTGTTATTGATGGAAGGTTTTTCTCCGAAAATTGA

>Glyma04g05550.1   sequence type=predicted peptide   gene model=Glyma04g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGYPRSKFKTVCVFCGSNSGNRQVFGDAAIQLGNELVKRNIDLVYGGGSVGLMGLISQRVYDGGCHVLGIIPKALMPLEISGETVGEVRIVSDMHERKAAMAQEADAFVALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNCLLALFDNGVKEGFIKPCARNIVVSATSAKELMMKMEHYTPSHEHVAPHQSWQMKQLGNIQMQSETVIDGRFFSEN*

>Glyma04g05550.2   sequence type=predicted peptide   gene model=Glyma04g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLISQRVYDGGCHVLGIIPKALMPLEISGETVGEVRIVSDMHERKAAMAQEADAFVALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNCLLALFDNGVKEGFIKPCARNIVVSATSAKELMMKMEHYTPSHEHVAPHQSWQMKQLGNIQMQSETVIDGRFFSEN*







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