Glyma04g05520 - SoyBase

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Report for Sequence Feature Glyma04g05520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4187757
stop:	4190317
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26180	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 6 \| chr2:11143433-11144982 REVERSE LENGTH=416	SoyBase	E_val: 2.00E-144	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF84	Panther	MYOSIN VIII	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7J7P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J7P3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTX8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTX8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05520

Paralog	Evidence	Comments
Glyma06g05530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g052200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05520

Limit To All Plant Sequences

>Glyma04g05520.1   sequence type=CDS   gene model=Glyma04g05520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCTCAGGAAAATGGGTAAAGGCATTAATCGGACTCAAGAAACCAGACAAAGACGACCATGTGAAGGAGGGTGGTGGTAAGAGCAAGAGGTGGAGGCTATGGAGGAGTTCTTCAGGGGACACGGGGGGTTCTTGGAAGGGTTTCAAAGGAGGAAACTACAGAGCAGCTTCTGAAGTGGGGTCTGATTCTTCTCCACCTGTTGTAGCAGCAGATGCAGATGCTGCTTTCACAGCCGCTGTAGCCACTGTAGTTCGAGCTCCACCTAAGGATTTCAGACTCGTCAAGCAAGAATGGGCAGCTATAAGAATCCAAACTGCTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCATTGAAGGGAGTGGTGAGGATTCAAGCGCTTGTTCGGGGGAGACAGGTGAGGAAGCAGGCTGCGGTGACATTGAGGTGCATGCAGGCCTTGGTTCGAGTTCAGGCCAGAGTAAGAGCTCGTCGTGTGAGGATGTCCATAGAGGGGCAAGCTGTGCAGAACTTGCTCAACGAGCGACGGAGTAAGCTTGATCTTTTGAAGCAAGCTGAGGAAGGATGGTGTGACAGCAGAGGAACGTTGGAAGATGTTAAGACAAAGATACAAATGAGGCAAGAAGGAGCTTTCAAAAGGGAAAGAGCAATGGCTTACTCTCTTGCTCACAAGCAATGCAGATCAACTCCAAGCTCTAATTCACGAACAAATGCCTCTTTTTCCTCTCTCAAGAGTCATGAGATGAACAAAGCTAACGGTGGGTGGAGTTGGTTGGAGCGTTGGATGGCAGCCAAGCCTTGGGAGAGTAGATTGATGGAACAATCACAATCTCAGGCTGAAGCCTTAGATAAAACCCCAACTCCAAAGAAGTTTGTGGAATCCTTTGTGAGCTCTAATTCCAAACCATGCACGGTCAAAGTCAAGAAAAACAACGTGACAACAAGGGTTTTTGCTAGGCCACCCCTGGTTGGGCAAGCTACACGCTCATCCTCAAGTCCAAGTTCCGAGTTTCGATACGATGAGAGTTCTGCATCATCCTCCATTTGTACATCTACAACACCAATGTCTGGGAACACTTGTGACAGGACTGAGGATAGTAATGGTAATGCTGTTGCTAGGCCTAATTACATGAACCTGACTCAGTCCACAAAGGCAAAGCAAAAGACAAGTAGTAATCATGTGTATAATAGAGCTCAGAGGCAGCAATCCATGGATGAGTTTCAATTTCTCAAGAGGGCAGCGGTTTTCTCCAATGGAGATTCCAAAAGCACGGCTGGTTCTGACCCTTCAATCAACTTTTCTAGGCCACTTCACTTGGACAAGAGTTCAGTTATGACACGTTGA

Predicted protein sequences of Glyma04g05520

Limit To All Plant Sequences

>Glyma04g05520.1   sequence type=predicted peptide   gene model=Glyma04g05520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGASGKWVKALIGLKKPDKDDHVKEGGGKSKRWRLWRSSSGDTGGSWKGFKGGNYRAASEVGSDSSPPVVAADADAAFTAAVATVVRAPPKDFRLVKQEWAAIRIQTAFRAFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQNLLNERRSKLDLLKQAEEGWCDSRGTLEDVKTKIQMRQEGAFKRERAMAYSLAHKQCRSTPSSNSRTNASFSSLKSHEMNKANGGWSWLERWMAAKPWESRLMEQSQSQAEALDKTPTPKKFVESFVSSNSKPCTVKVKKNNVTTRVFARPPLVGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCDRTEDSNGNAVARPNYMNLTQSTKAKQKTSSNHVYNRAQRQQSMDEFQFLKRAAVFSNGDSKSTAGSDPSINFSRPLHLDKSSVMTR*

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