SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26170 | AT | Annotation by Michelle Graham. TAIR10: cytochrome P450, family 711, subfamily A, polypeptide 1 | chr2:11140851-11143270 FORWARD LENGTH=522 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0009934 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010223 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary shoot formation | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0019825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG0158 | KOG | Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies | JGI | ISS | |
| PTHR24301 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24301:SF127 | Panther | JGI | ISS | ||
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_Q2MIZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 71B10 n=1 Tax=Medicago truncatula RepID=Q2MIZ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233968F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233968F related cluster n=1 Tax=unknown RepID=UPI000233968F | SoyBase | E_val: 0 | ISS |
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Glyma04g05510 not represented in the dataset |
Glyma04g05510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g05520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g052100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g05510.3 sequence type=transcript gene model=Glyma04g05510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACACGTCTCTTGGTTTCAAACATTCTAATATTCATATATTTATATATTTATATGATGTTTCTATTTCTCATTCACTCTGTCTTTTATCACTTTATCTATCACTTATGGCATTATGACATATTTCATTTCGTTCTTCGTGCCTTTCACCAGATTGATATACCTAGCAAGCGTGTATCTGTTCAGCACCAATCCATGGTCTGAAGAATATTTGCGATTCCTATACTGTTGCAAGGAAAATAAAACAAAGATAGTATATACATGGTGGTGTTCATGGATTATTTGGAATGGTTGTTTGCAATTCCAAGTGTCCCTTCTGCTTCAGCAATGTTCACCCTGCTTGCTTTAATTGGAGGATTGTTGGTTTATCTGTATGCACCCTATTGGGGGTTAAGGAAGGTTCCAGGGCCACCATCTCTGCCCCTTGTAGGACACCTTCCCTTGCTGGCAAAGTATGGTCCTGATGTGTTCTCAGTCCTCGCCAAGCAATATGGTCCTATTTACAGATTCCATATGGGAAGACAGCCACTAATAATTATAGCAGATGCAGAGCTTTGTAAGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCAGCCGGGATTCACAATGGTCTACCATGCGAAACACTATATTATCAATGTACCAGCCATCATACTTGTCCAGATTAGTGCCAACAATGCAGTCCTTCATAGAATCTGCGACTCAAAACCTTGACTCTCAAAAAGAAGACATAATTTTCTCCAACCTGTCCCTAAGACTAGCAACTGATGTGATTGGACATGCAGCATTTGGTGTCAACTTTGGCCTTTCTAGGCCACATTCAGTTTGTGATTCCATCAAGAGTGTTAATGTTAACAATAACAATAACAATGCAAGTGCTAGTAGTAGTAGTAATGATAATGAAGTATCAGATTTCATCGACCAACACATATACTCCACAACACAGCTAAAGATGGACTTGTCTGGTTCCTTGTCCATTATCTTGGGTCTGCTTTTGCCAATACTTCAGGAGCCATTTAGGCAGATTCTGAAGAGAATTCCTGGCACCATGGACTGGAAGATTGAGCGTACCAACCAGAAACTAAGTGGCCGTCTTGATGAGATTGTGGAGAAGAGAATGAAAGACAAGGCACGAAGTTCGAAGGATTTCTTGTCACTCATACTTAATGCCAGAGAAACAAAAGCTGTTTCAGAGAATGTGTTCACACCTGACTACATAAGTGCTGTTACTTACGAGCACCTACTTGCTGGCTCCGCAACCACTTCCTTTACCTTGTCTTCTGTTGTCTATTTGGTTGCTGGACACCCTGAAGTTGAGAAAAAGTTGCTTCATGAGATTGATGGGTTTGGTCCAGTGGATCAGATACCCACTTCTCAAGATCTTCATAACAAGTTTCCTTATCTTGATCAGGTGATCAAAGAGGCCATGAGGTTTTACACTGTCTCTCCCTTAGTTGCAAGAGAAACATCAAATGAAGTAGAGATTGGAGGCTATCTCCTTCCAAAGGGGACTTGGGTCTGGTTAGCGCTTGGAGTTCCAGCAAAAGACCCCAAAAACTTTCCAGAGCCAGAAAAGTTCAAACCAGATAGGTTTGACCCCAACTGTGAAGAAATGAAACGAAGGCATCCTTATGCTTTTATACCATTTGGAATTGGTCCTCGGGCTTGCATTGGTAAACAATTTTCCCTACAAGAGATCAAGATTTCTCTGATTCATTTATATCGAAAATACTTGTTTCGGCATTCTCCCAATATGGAAAACCCCTTAGAACTCCAGTATGGGATAGTCCTCAACTTCAAGCATGGGGTCAAGCTCAGAGTCATAAAAAGAACAGAGACTTGCTAAGTAAACGGTTCAGACATGGCTTATACTAGTACAGAGTTCAGAAGATGAATTATAAGATGGAGTGTGCTAAAATCCAATAATGAAAAATTGTAATGTTACGCAGAATCAGCCAATAAGTGTTTAAAATAATAAGGTCAAAGAGTGTGTTTGCATTTCCCAAATATAGAATTGTAAGTTTATAAGAGTAAGAGACACTCTTCCTACAAGATTATGAATGACATTATCATTTGTGGTAAAAAAAAACACTCAAAAGCATATGACAAAATCCGTCTAAATATGTTAACAAAACGGGTGTTT
>Glyma04g05510.2 sequence type=CDS gene model=Glyma04g05510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTGTTCATGGATTATTTGGAATGGTTGTTTGCAATTCCAAGTGTCCCTTCTGCTTCAGCAATGTTCACCCTGCTTGCTTTAATTGGAGGATTGTTGGTTTATCTGTATGCACCCTATTGGGGGTTAAGGAAGGTTCCAGGGCCACCATCTCTGCCCCTTGTAGGACACCTTCCCTTGCTGGCAAAGTATGGTCCTGATGTGTTCTCAGTCCTCGCCAAGCAATATGGTCCTATTTACAGATTCCATATGGGAAGACAGCCACTAATAATTATAGCAGATGCAGAGCTTTGTAAGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCAGCCGGGATTCACAATGGTCTACCATGCGAAACACTATATTATCAATGTACCAGCCATCATACTTGTCCAGATTAGTGCCAACAATGCAGTCCTTCATAGAATCTGCGACTCAAAACCTTGACTCTCAAAAAGAAGACATAATTTTCTCCAACCTGTCCCTAAGACTAGCAACTGATGTGATTGGACATGCAGCATTTGGTGTCAACTTTGGCCTTTCTAGGCCACATTCAGTTTGTGATTCCATCAAGAGTGTTAATGTTAACAATAACAATAACAATGCAAGTGCTAGTAGTAGTAGTAATGATAATGAAGTATCAGATTTCATCGACCAACACATATACTCCACAACACAGCTAAAGATGGACTTGTCTGGTTCCTTGTCCATTATCTTGGGTCTGCTTTTGCCAATACTTCAGGAGCCATTTAGGCAGATTCTGAAGAGAATTCCTGGCACCATGGACTGGAAGATTGAGCGTACCAACCAGAAACTAAGTGGCCGTCTTGATGAGATTGTGGAGAAGAGAATGAAAGACAAGGCACGAAGTTCGAAGGATTTCTTGTCACTCATACTTAATGCCAGAGAAACAAAAGCTGTTTCAGAGAATGTGTTCACACCTGACTACATAAGTGCTGTTACTTACGAGCACCTACTTGCTGGCTCCGCAACCACTTCCTTTACCTTGTCTTCTGTTGTCTATTTGGTTGCTGGACACCCTGAAGTTGAGAAAAAGTTGCTTCATGAGATTGATGGGTTTGGTCCAGTGGATCAGATACCCACTTCTCAAGATCTTCATAACAAGTTTCCTTATCTTGATCAGGTGATCAAAGAGGCCATGAGGTTTTACACTGTCTCTCCCTTAGTTGCAAGAGAAACATCAAATGAAGTAGAGATTGGAGGCTATCTCCTTCCAAAGGGGACTTGGGTCTGGTTAGCGCTTGGAGTTCCAGCAAAAGACCCCAAAAACTTTCCAGAGCCAGAAAAGTTCAAACCAGATAGGTTTGACCCCAACTGTGAAGAAATGAAACGAAGGCATCCTTATGCTTTTATACCATTTGGAATTGGTCCTCGGGCTTGCATTGGTAAACAATTTTCCCTACAAGAGATCAAGATTTCTCTGATTCATTTATATCGAAAATACTTGTTTCGGCATTCTCCCAATATGGAAAACCCCTTAGAACTCCAGTATGGGATAGTCCTCAACTTCAAGCATGGGGTCAAGCTCAGAGTCATAAAAAGAACAGAGACTTGCTAA >Glyma04g05510.3 sequence type=CDS gene model=Glyma04g05510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTGTTCATGGATTATTTGGAATGGTTGTTTGCAATTCCAAGTGTCCCTTCTGCTTCAGCAATGTTCACCCTGCTTGCTTTAATTGGAGGATTGTTGGTTTATCTGTATGCACCCTATTGGGGGTTAAGGAAGGTTCCAGGGCCACCATCTCTGCCCCTTGTAGGACACCTTCCCTTGCTGGCAAAGTATGGTCCTGATGTGTTCTCAGTCCTCGCCAAGCAATATGGTCCTATTTACAGATTCCATATGGGAAGACAGCCACTAATAATTATAGCAGATGCAGAGCTTTGTAAGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCAGCCGGGATTCACAATGGTCTACCATGCGAAACACTATATTATCAATGTACCAGCCATCATACTTGTCCAGATTAGTGCCAACAATGCAGTCCTTCATAGAATCTGCGACTCAAAACCTTGACTCTCAAAAAGAAGACATAATTTTCTCCAACCTGTCCCTAAGACTAGCAACTGATGTGATTGGACATGCAGCATTTGGTGTCAACTTTGGCCTTTCTAGGCCACATTCAGTTTGTGATTCCATCAAGAGTGTTAATGTTAACAATAACAATAACAATGCAAGTGCTAGTAGTAGTAGTAATGATAATGAAGTATCAGATTTCATCGACCAACACATATACTCCACAACACAGCTAAAGATGGACTTGTCTGGTTCCTTGTCCATTATCTTGGGTCTGCTTTTGCCAATACTTCAGGAGCCATTTAGGCAGATTCTGAAGAGAATTCCTGGCACCATGGACTGGAAGATTGAGCGTACCAACCAGAAACTAAGTGGCCGTCTTGATGAGATTGTGGAGAAGAGAATGAAAGACAAGGCACGAAGTTCGAAGGATTTCTTGTCACTCATACTTAATGCCAGAGAAACAAAAGCTGTTTCAGAGAATGTGTTCACACCTGACTACATAAGTGCTGTTACTTACGAGCACCTACTTGCTGGCTCCGCAACCACTTCCTTTACCTTGTCTTCTGTTGTCTATTTGGTTGCTGGACACCCTGAAGTTGAGAAAAAGTTGCTTCATGAGATTGATGGGTTTGGTCCAGTGGATCAGATACCCACTTCTCAAGATCTTCATAACAAGTTTCCTTATCTTGATCAGGTGATCAAAGAGGCCATGAGGTTTTACACTGTCTCTCCCTTAGTTGCAAGAGAAACATCAAATGAAGTAGAGATTGGAGGCTATCTCCTTCCAAAGGGGACTTGGGTCTGGTTAGCGCTTGGAGTTCCAGCAAAAGACCCCAAAAACTTTCCAGAGCCAGAAAAGTTCAAACCAGATAGGTTTGACCCCAACTGTGAAGAAATGAAACGAAGGCATCCTTATGCTTTTATACCATTTGGAATTGGTCCTCGGGCTTGCATTGGTAAACAATTTTCCCTACAAGAGATCAAGATTTCTCTGATTCATTTATATCGAAAATACTTGTTTCGGCATTCTCCCAATATGGAAAACCCCTTAGAACTCCAGTATGGGATAGTCCTCAACTTCAAGCATGGGGTCAAGCTCAGAGTCATAAAAAGAACAGAGACTTGCTAA
>Glyma04g05510.2 sequence type=predicted peptide gene model=Glyma04g05510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVFMDYLEWLFAIPSVPSASAMFTLLALIGGLLVYLYAPYWGLRKVPGPPSLPLVGHLPLLAKYGPDVFSVLAKQYGPIYRFHMGRQPLIIIADAELCKEAGIKKFKDISNRSIPSPISASPLHQKGLFFSRDSQWSTMRNTILSMYQPSYLSRLVPTMQSFIESATQNLDSQKEDIIFSNLSLRLATDVIGHAAFGVNFGLSRPHSVCDSIKSVNVNNNNNNASASSSSNDNEVSDFIDQHIYSTTQLKMDLSGSLSIILGLLLPILQEPFRQILKRIPGTMDWKIERTNQKLSGRLDEIVEKRMKDKARSSKDFLSLILNARETKAVSENVFTPDYISAVTYEHLLAGSATTSFTLSSVVYLVAGHPEVEKKLLHEIDGFGPVDQIPTSQDLHNKFPYLDQVIKEAMRFYTVSPLVARETSNEVEIGGYLLPKGTWVWLALGVPAKDPKNFPEPEKFKPDRFDPNCEEMKRRHPYAFIPFGIGPRACIGKQFSLQEIKISLIHLYRKYLFRHSPNMENPLELQYGIVLNFKHGVKLRVIKRTETC* >Glyma04g05510.3 sequence type=predicted peptide gene model=Glyma04g05510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVFMDYLEWLFAIPSVPSASAMFTLLALIGGLLVYLYAPYWGLRKVPGPPSLPLVGHLPLLAKYGPDVFSVLAKQYGPIYRFHMGRQPLIIIADAELCKEAGIKKFKDISNRSIPSPISASPLHQKGLFFSRDSQWSTMRNTILSMYQPSYLSRLVPTMQSFIESATQNLDSQKEDIIFSNLSLRLATDVIGHAAFGVNFGLSRPHSVCDSIKSVNVNNNNNNASASSSSNDNEVSDFIDQHIYSTTQLKMDLSGSLSIILGLLLPILQEPFRQILKRIPGTMDWKIERTNQKLSGRLDEIVEKRMKDKARSSKDFLSLILNARETKAVSENVFTPDYISAVTYEHLLAGSATTSFTLSSVVYLVAGHPEVEKKLLHEIDGFGPVDQIPTSQDLHNKFPYLDQVIKEAMRFYTVSPLVARETSNEVEIGGYLLPKGTWVWLALGVPAKDPKNFPEPEKFKPDRFDPNCEEMKRRHPYAFIPFGIGPRACIGKQFSLQEIKISLIHLYRKYLFRHSPNMENPLELQYGIVLNFKHGVKLRVIKRTETC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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