Glyma04g05490 - SoyBase

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Report for Sequence Feature Glyma04g05490

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4154986
stop:	4156516
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33040	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr4:15940779-15941213 REVERSE LENGTH=144	SoyBase	E_val: 4.00E-56	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
KOG1752	KOG	Glutaredoxin and related proteins	JGI		ISS
PTHR10168	Panther	GLUTAREDOXIN	JGI		ISS
PTHR10168:SF47	Panther	GLUTAREDOXIN	JGI		ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_I1JTX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTX4_SOYBN	SoyBase	E_val: 1.00E-88	ISS
UniRef100_Q8L9S3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutaredoxin-C6 n=1 Tax=Arabidopsis thaliana RepID=GRXC6_ARATH	SoyBase	E_val: 2.00E-53	ISS

Expression Patterns of Glyma04g05490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05490

Paralog	Evidence	Comments
Glyma06g05510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g051900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05490

Limit To All Plant Sequences

>Glyma04g05490.2   sequence type=transcript   gene model=Glyma04g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATGATACACTGGTATGTAAAAAAAAAAAAAAATCTAACTAAAAAAAGGAGTGAGAAAAAGGTAAGTGAAATTATGATAATTACGTTGCGTCTGGATGTATAGTTGAAGTAGATGAAAATGATAGAAAAGAATGGCATATAAGGGCGCGTGGGGTAGAGTGGAGTGGTGGCAGCGATTGTAGAAAAAAAAAAAAAGAAACAGTAGTTTGTGATGAAAGCAAGCACGATTTGTCCTCTTGGATTTATAAAATAAAAACTCCCTCAAAGTCGGTTCCACAGTTTCAGAGTCTCTTTCTTCTTCTAGTAGTGCACCAGCAACAACTACAGTGAAGAGTGAGGAGGGGATGCAAGGCATAGGGATAGGGTGCTGCTCAAACGACGTCGTAGGGCAGCTGGAGCTAAGTCCCACTATGAGCAACTCCTCTTCCTCGCTATCGATGGAGCTGGACGAGTCCCCCGAGAGCCGAATCCAACGGCTGATATCGGAGCACCCCGTCATCATCTTCACCCGATCCTCCTGCTGCATGTGCCACGTCATGAAGAAGCTCCTCGCCACCATCGGCGTCCACCCCACCGTCATCGAATTGGACGACCACGAGATCGCCTCCCTCCCCCTCCCCGACACCACCGCCCCCGCCGCCTTCATCGGCGGCACCTGCATCGGCGGCCTCGAATCCCTCGTCGCCCTCCACGTCAGCGGCCACCTCATCCCCAAACTCGTCCAAGTCGGCGCTCTCTGGTTTGGCAGAATTTAGGTGAGTGATCACGAATCTGGTTTGACTTGCCGTTTACGGATCAGAGGTGACACGTGTACAGGAATGACATCCATGACCAGCGGGTGAGGGTGGTAATAATAACGTCAACTTTGGCCTCAACGCGCTACACTGAGTAGATTGCTCTTGTCCGTAGATTGGGTCCCATTCACAATTATTATGCAATCGGGACCGTAGATAGGGCAATCGCTTTGTCAGTTTGCTTCGGGAATCCTAAGCTTATCTATTCCTCCATCTCCTCTTCCCCTTTTACTTGTATGTAAATTCATTAATTTCCGGGTTAGAATTATGGCACTTTGTTTTATGCTAGTTTCACTTTCATCGTTATCTTCATTTTCCTCTTGTTTTTTTTTGTTTCAATGAGAATAAATGTATCGTAATGGCAAATATTATCTGGTTTGGATTGGGTGGGTGGGACCGTAAGAAACAGTAACACCACCGTGCCCTACCAAGTGAAGGTTGGAATAGAAACTTATTTGACAAAGGCATGCACCCCCAATTATTGCAAACAAACTTACTATACGTTGATGCAATTCTACACGCCTCTCTTTTCTTTTTCCTTCTGGTGCGCTACCTTGGTGTTTTTT

Coding sequences of Glyma04g05490

Limit To All Plant Sequences

>Glyma04g05490.1   sequence type=CDS   gene model=Glyma04g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGCATAGGGATAGGGTGCTGCTCAAACGACGTCGTAGGGCAGCTGGAGCTAAGTCCCACTATGAGCAACTCCTCTTCCTCGCTATCGATGGAGCTGGACGAGTCCCCCGAGAGCCGAATCCAACGGCTGATATCGGAGCACCCCGTCATCATCTTCACCCGATCCTCCTGCTGCATGTGCCACGTCATGAAGAAGCTCCTCGCCACCATCGGCGTCCACCCCACCGTCATCGAATTGGACGACCACGAGATCGCCTCCCTCCCCCTCCCCGACACCACCGCCCCCGCCGCCTTCATCGGCGGCACCTGCATCGGCGGCCTCGAATCCCTCGTCGCCCTCCACGTCAGCGGCCACCTCATCCCCAAACTCGTCCAAGTCGGCGCTCTCTGGAATTTAGGTGAGTGA

>Glyma04g05490.2   sequence type=CDS   gene model=Glyma04g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGCATAGGGATAGGGTGCTGCTCAAACGACGTCGTAGGGCAGCTGGAGCTAAGTCCCACTATGAGCAACTCCTCTTCCTCGCTATCGATGGAGCTGGACGAGTCCCCCGAGAGCCGAATCCAACGGCTGATATCGGAGCACCCCGTCATCATCTTCACCCGATCCTCCTGCTGCATGTGCCACGTCATGAAGAAGCTCCTCGCCACCATCGGCGTCCACCCCACCGTCATCGAATTGGACGACCACGAGATCGCCTCCCTCCCCCTCCCCGACACCACCGCCCCCGCCGCCTTCATCGGCGGCACCTGCATCGGCGGCCTCGAATCCCTCGTCGCCCTCCACGTCAGCGGCCACCTCATCCCCAAACTCGTCCAAGTCGGCGCTCTCTGGTTTGGCAGAATTTAG

Predicted protein sequences of Glyma04g05490

Limit To All Plant Sequences

>Glyma04g05490.1   sequence type=predicted peptide   gene model=Glyma04g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGIGIGCCSNDVVGQLELSPTMSNSSSSLSMELDESPESRIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPTVIELDDHEIASLPLPDTTAPAAFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWNLGE*

>Glyma04g05490.2   sequence type=predicted peptide   gene model=Glyma04g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGIGIGCCSNDVVGQLELSPTMSNSSSSLSMELDESPESRIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPTVIELDDHEIASLPLPDTTAPAAFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWFGRI*

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