Glyma04g05480 - SoyBase

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Report for Sequence Feature Glyma04g05480

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4145000
stop:	4149937
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56450	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr5:22858772-22859764 REVERSE LENGTH=330	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005347	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP transmembrane transporter activity	SoyBase	N/A	ISS
KOG0749	KOG	Mitochondrial ADP/ATP carrier proteins	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF155	Panther		JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7J7N8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP/ATP translocase-like protein n=1 Tax=Medicago truncatula RepID=G7J7N8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTX3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05480

Paralog	Evidence	Comments
Glyma06g05500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g051800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05480

Limit To All Plant Sequences

>Glyma04g05480.1   sequence type=CDS   gene model=Glyma04g05480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCAGCGGATGATGATGACCCAGAAAGGAGAAGATTGAATAGTGGGTTGAAGAGCTTTCAGCGCGATCTGATGGCTGGGGCGGTGATGGGTGGTGTGGTGCACACGATTGTGGCCCCAATTGAGAGGGCGAAGCTATTGTTGCAGACCCAAGAGAGCAACTTGGCGATTGTGGCGAGTGGGCGTCGCAGATTCAAGGGCATGTTGGATTGCATAGCCCGTACGGTCAGGGAAGAAGGCATTCTCTCTTTGTGGAGAGGCAATGGCAGCAGTGTTATTCGTTACTATCCTTCTGTCGCTCTCAATTTCTCTCTCAAGGATCTATACAAAAGCATGTTAAGAGGTGGAAACTCTAGTGACAATCTTTTGCCAGGTGCCACTGCTAATTTTGCAGCGGGCGCTGCAGCCGGCTGTACAACGCTTGTGTTGGTATACCCCCTTGATATAGCACACACGCGCCTTGCTGCTGACATTGGAAGGACAGACGTGCGCCAATTTCGAGGCATTTACCATTTCTTGGCTACCATATTCCACAAGGATGGCATTTGGGGGATCTACCGGGGCCTTCCTGCATCTCTACATGGGATGGTGGTACACAGGGGCCTTTATTTTGGAGGCTTTGATACCATGAAAGAGATCATGTCTGAAGAATCAAAACCTGAGTTGGCGTTGTGGAAGCGTTGGGTGGTAGCTCAGGCAGTCACAACCTCTGCCGGGTTGATATCTTATCCACTAGACACGGTTCGTAGGAGGATGATGATGCAATCTGGCATGGAACAGCCAGTGTACAACAGCACCTTGGACTGCTGGAGGAAGATCTATAGGACAGAGGGGTTGGCTTCATTTTACCGTGGTGCAGTTTCTAATGTGTTTAGGAGCACAGGAGCAGCAGCTATCTTAGTCTTGTACGATGAGGTTAAGAAATTTATGAACTGGGGGAGAATTTAA

Predicted protein sequences of Glyma04g05480

Limit To All Plant Sequences

>Glyma04g05480.1   sequence type=predicted peptide   gene model=Glyma04g05480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAADDDDPERRRLNSGLKSFQRDLMAGAVMGGVVHTIVAPIERAKLLLQTQESNLAIVASGRRRFKGMLDCIARTVREEGILSLWRGNGSSVIRYYPSVALNFSLKDLYKSMLRGGNSSDNLLPGATANFAAGAAAGCTTLVLVYPLDIAHTRLAADIGRTDVRQFRGIYHFLATIFHKDGIWGIYRGLPASLHGMVVHRGLYFGGFDTMKEIMSEESKPELALWKRWVVAQAVTTSAGLISYPLDTVRRRMMMQSGMEQPVYNSTLDCWRKIYRTEGLASFYRGAVSNVFRSTGAAAILVLYDEVKKFMNWGRI*

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