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Report for Sequence Feature Glyma04g05471

Feature Type:gene_model
Chromosome:Gm04
Start:4135841
stop:4138280
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05471
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26140AT Annotation by Michelle Graham. TAIR10: FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717 SoyBaseE_val: 8.00E-78ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004176GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity SoyBaseN/AISS
GO:0004222GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008237GO-mf Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR23076Panther METALLOPROTEASE M41 FTSH JGI ISS
PTHR23076:SF10Panther CELL DIVISION PROTEIN FTSH HOMOLOG JGI ISS
PF01434PFAM Peptidase family M41 JGI ISS
UniRef100_G7J7N5UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent zinc metalloprotease FtsH 1 n=1 Tax=Medicago truncatula RepID=G7J7N5_MEDTR SoyBaseE_val: 3.00E-82ISS
UniRef100_I1M935UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M935_SOYBN SoyBaseE_val: 7.00E-83ISS

Expression Patterns of Glyma04g05471
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g05471 not represented in the dataset
Glyma04g05471 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05471 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g05471
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g05471
>Glyma04g05471.2   sequence type=transcript   gene model=Glyma04g05471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTACCATCAAAACAATCCTGAAGCTGTGATTAGAGCATTTGAAAGTCAGCACTCTCTACATTGTAATCCTTCAGCACTTCCTCAATATGTTAAAGCATTAGTGAAAGTTGATAGACTGGATCAAACTAAACTACTGAAGACTTTGCAAAGAGGAATTGCAACTGCTGTCGCTCAACAACAGAAGTGAACACAAGTCAGCCATTATATCTGAGGAGAACAGAAGGATTACTGGTTTCCATGAGGGTGGCCATGCCTTAGTGGCAATGCATACTGCTGGAGCACTTCCTGTTCACAAGGCAACCGTAGTTCCTCGTGGCTCGGCTCTTGGCATGGTTACTCAATTACCTGACAAGGATCAGACCAGTATCAGCTGTAAACAGATGCTTGCTTATCTTGATGTTTCCATGGGAAGCAGGGTTGATGAAGAGCTAATCTTTGGAGAAAGTGAAGTTACTTCTGGTCTATCATCTGATATTTCACACGCAACTAATCTTGCTAGGAAAATGGTTACTAGATATGGTATGAGTAATAAAGTTGGACTAGTCACTCACGATTACAATGATAATGGGAAAAGCATGAGCTCAGAAACTAGGCTTCTTATTGAGAATGAGGAGAAGAGGTTGCTGGAGAGGGCTTACATCAATGCAAAAACTATTCTGAGCACACACGATAAGGAGCTTCGTGCAATTGCAAACGCTTTTCCGGAGCATGAGACACTTGCAGGAAATCAGATAAAGGCATTACTTGAAAAAGTAAGGTCCAAACAGCAGCAACATCAGAAAACAATTGAATCTCAGAGCAGTTCACTGTCTAATCCAATTGCTAGTTCTACTGCTGCTGCAGCTGCATCCAAGGCTCAAGGTGCTACCCCTGTGGGATCATAGAGTGGTGACTGGTGACACATGCTACAAAATAACTATTGGATTCTAGTGTTTCCACTTTAGTCAATGGAACTTAAATTATGTATTCTGGCTCAAGTTTATGTCATATTGTAGTTATTTAAAGATTGTAGGATACTAGTTCCCATTGATTTGTTTTATTAGCTAGTGTTTGATCACTAAAAATTTGAATATTTC
Coding sequences of Glyma04g05471
>Glyma04g05471.1   sequence type=CDS   gene model=Glyma04g05471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATACTGCTGGAGCACTTCCTGTTCACAAGGCAACCGTAGTTCCTCGTGGCTCGGCTCTTGGCATGGTTACTCAATTACCTGACAAGGATCAGACCAGTATCAGCTGTAAACAGATGCTTGCTTATCTTGATGTTTCCATGGGAAGCAGGGTTGATGAAGAGCTAATCTTTGGAGAAAGTGAAGTTACTTCTGGTCTATCATCTGATATTTCACACGCAACTAATCTTGCTAGGAAAATGGTTACTAGATATGGTATGAGTAATAAAGTTGGACTAGTCACTCACGATTACAATGATAATGGGAAAAGCATGAGCTCAGAAACTAGGCTTCTTATTGAGAATGAGGAGAAGAGGTTGCTGGAGAGGGCTTACATCAATGCAAAAACTATTCTGAGCACACACGATAAGGAGCTTCGTGCAATTGCAAACGCTTTTCCGGAGCATGAGACACTTGCAGGAAATCAGATAAAGGCATTACTTGAAAAAGTAAGGTCCAAACAGCAGCAACATCAGAAAACAATTGAATCTCAGAGCAGTTCACTGTCTAATCCAATTGCTAGTTCTACTGCTGCTGCAGCTGCATCCAAGGCTCAAGGTGCTACCCCTGTGGGATCATAG

>Glyma04g05471.2   sequence type=CDS   gene model=Glyma04g05471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATACTGCTGGAGCACTTCCTGTTCACAAGGCAACCGTAGTTCCTCGTGGCTCGGCTCTTGGCATGGTTACTCAATTACCTGACAAGGATCAGACCAGTATCAGCTGTAAACAGATGCTTGCTTATCTTGATGTTTCCATGGGAAGCAGGGTTGATGAAGAGCTAATCTTTGGAGAAAGTGAAGTTACTTCTGGTCTATCATCTGATATTTCACACGCAACTAATCTTGCTAGGAAAATGGTTACTAGATATGGTATGAGTAATAAAGTTGGACTAGTCACTCACGATTACAATGATAATGGGAAAAGCATGAGCTCAGAAACTAGGCTTCTTATTGAGAATGAGGAGAAGAGGTTGCTGGAGAGGGCTTACATCAATGCAAAAACTATTCTGAGCACACACGATAAGGAGCTTCGTGCAATTGCAAACGCTTTTCCGGAGCATGAGACACTTGCAGGAAATCAGATAAAGGCATTACTTGAAAAAGTAAGGTCCAAACAGCAGCAACATCAGAAAACAATTGAATCTCAGAGCAGTTCACTGTCTAATCCAATTGCTAGTTCTACTGCTGCTGCAGCTGCATCCAAGGCTCAAGGTGCTACCCCTGTGGGATCATAG
Predicted protein sequences of Glyma04g05471
>Glyma04g05471.1   sequence type=predicted peptide   gene model=Glyma04g05471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHTAGALPVHKATVVPRGSALGMVTQLPDKDQTSISCKQMLAYLDVSMGSRVDEELIFGESEVTSGLSSDISHATNLARKMVTRYGMSNKVGLVTHDYNDNGKSMSSETRLLIENEEKRLLERAYINAKTILSTHDKELRAIANAFPEHETLAGNQIKALLEKVRSKQQQHQKTIESQSSSLSNPIASSTAAAAASKAQGATPVGS*

>Glyma04g05471.2   sequence type=predicted peptide   gene model=Glyma04g05471   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHTAGALPVHKATVVPRGSALGMVTQLPDKDQTSISCKQMLAYLDVSMGSRVDEELIFGESEVTSGLSSDISHATNLARKMVTRYGMSNKVGLVTHDYNDNGKSMSSETRLLIENEEKRLLERAYINAKTILSTHDKELRAIANAFPEHETLAGNQIKALLEKVRSKQQQHQKTIESQSSSLSNPIASSTAAAAASKAQGATPVGS*






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