Report for Sequence Feature Glyma04g05460
Feature Type: gene_model
Chromosome: Gm04
Start: 4130526
stop: 4132041
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g05460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G11890 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3831770-3832633 FORWARD LENGTH=287
SoyBase E_val: 6.00E-58 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03168 PFAM
Late embryogenesis abundant protein
JGI ISS
UniRef100_A2Q440 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Harpin-induced 1 n=1 Tax=Medicago truncatula RepID=A2Q440_MEDTR
SoyBase E_val: 4.00E-50 ISS
UniRef100_I1JTX2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTX2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g05460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g05460
Paralog Evidence Comments
Glyma06g05490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g05460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g051600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g05460
Coding sequences of Glyma04g05460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g05460.1 sequence type=CDS gene model=Glyma04g05460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCGACCCAGCTTCCAAACCCAACGGAAACGCCGCGGCCGCCACTAACGGCAATCCCGGACCCGTTAAGTCTCAACTCTACAACCCCAACCGTCAAGTTTACCGGCCGCAATCGCACTACCACCGTCGCGGCCAACGCTCCCACCGCAACTTCTGCTGCTGCTGCTGCTTCTGGACCATCCTCACCCTCCTCGCGGTGGCTCTCCTCGCCGCCATTGTCGGCGCCGCACTTTACGTACTCTACCGCCCTCACCGTCCCGAATTCTCCGTCACAAACCTCCGCATTGCGAAGATGAACCTCACCACTTCCGCCGACTCCCCTTCCCACCTCACCACGCTCTTCAACCTCACTCTCATCGCGAAGAACCCTAACAACCACCTCGTCTTCTTCTACGACCCGTTCTCCATGACGGTGTTCTCGAACTCCGTCCCCGTCGGGAACGGTTCCGTTACGGCGTTTACTTCGGACAAGAACAACCAGACGAGCCTCCGCGCGGTGCTGTCGGGGTCGCAAGATCTGGACACGGACTCGTTGACTAGCCTGAGATCGGGGCTGAAGATGAAGAGAGGTTTCCCCGTGGAGATTCAGATGGACACCAAGGTGAAGATGAAGATGGATTGGCTCAAGAGCAAGAAGGTCGGAATTCGAGTCACCTGCGACGGAATCAGAGGAACCGTTCCCTCCGGCAAGTCTCCGGCGGTGGCCTCCGTCGTCGACTCCGAGTGTAAGGTGGATCTTCGAATCAAGATCTGGAAGTTCTCCTTTTAA
Predicted protein sequences of Glyma04g05460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g05460.1 sequence type=predicted peptide gene model=Glyma04g05460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSDPASKPNGNAAAATNGNPGPVKSQLYNPNRQVYRPQSHYHRRGQRSHRNFCCCCCFWTILTLLAVALLAAIVGAALYVLYRPHRPEFSVTNLRIAKMNLTTSADSPSHLTTLFNLTLIAKNPNNHLVFFYDPFSMTVFSNSVPVGNGSVTAFTSDKNNQTSLRAVLSGSQDLDTDSLTSLRSGLKMKRGFPVEIQMDTKVKMKMDWLKSKKVGIRVTCDGIRGTVPSGKSPAVASVVDSECKVDLRIKIWKFSF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
