Glyma04g05450 - SoyBase

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Report for Sequence Feature Glyma04g05450

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4122039
stop:	4126178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11870	AT	Annotation by Michelle Graham. TAIR10: Alkaline phytoceramidase (aPHC) \| chr5:3825720-3827363 FORWARD LENGTH=270	SoyBase	E_val: 4.00E-106	ISS
GO:0006672	GO-bp	Annotation by Michelle Graham. GO Biological Process: ceramide metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0016811	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	SoyBase	N/A	ISS
PF05875	PFAM	Alkaline phytoceramidase (aPHC)	JGI		ISS
UniRef100_F4JZD5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alkaline phytoceramidase (APHC) n=2 Tax=Arabidopsis thaliana RepID=F4JZD5_ARATH	SoyBase	E_val: 2.00E-103	ISS
UniRef100_UPI000233968D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233968D related cluster n=1 Tax=unknown RepID=UPI000233968D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05450

Paralog	Evidence	Comments
Glyma06g05480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g051500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05450

Limit To All Plant Sequences

>Glyma04g05450.1   sequence type=CDS   gene model=Glyma04g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTAGGTTGGGTGGCGAAGCCGAATAATCAACAATGCAGAAGGTGGACGACAATTCGTATATGGGGAGCAACGTTTATCTGTTGCATGTGTTTAATCTTCTTCACTCCCAGAATCCCTCGCTCTCCCAAGCATCACCAATTCGTTGACATGCGCAATCTTCTCGGAGTACCCAACACGTTGAATGTGATGACAAATTTCCCGTTTTTAGTTGTGGGTGTTCTGGGCCTTGTGCTTGCCCTGGAAGAAGGTGTCTTCAACATAAGTTCCCAAGGAGAGGTTTGGACATGGGCACTGTTCTATGCTGGAATAGCGGGTGTGGCTTTTGGCTCTGCTTATTACCATTTGAAGCCCGATGACCATCGTGTGTTATGGGACACTTTACCGATGATGGTGGCCTTCTCCTCACTTTTGTCTAGTTTGGTTGTTGAGAGATTGGGCCAGAGGATTGGACTGTGTTGTATGTTTGCACTCAATCTTGCTGCCTTTCTATGTGTAATTTATGAACGAATTTATAATGATGTTCGGTTCTGCATGATGTTCCAGTTGACTCTGCCTCTAGCTATTCCGGTAATAGCAGTCTTGTACCGCTCCAAATATACTCACTCAAGATATTGGTTTTTTTCTACAGGGATTTATCTGCTAGCAAAATTTGAAGGTGCTACTGACAGGAAATTGTACCATGTAAATAACTACATCATCAGTGGGCATTCTTTGGAACACTTGTGCTTAGCACTGATCCCGATTTTACTCAGCGTAATGCTCATCAACAGGGAACTAAAGTTTCAAAGATTAGTTGATCATAAAGATAGACCATGA

Predicted protein sequences of Glyma04g05450

Limit To All Plant Sequences

>Glyma04g05450.1   sequence type=predicted peptide   gene model=Glyma04g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGWVAKPNNQQCRRWTTIRIWGATFICCMCLIFFTPRIPRSPKHHQFVDMRNLLGVPNTLNVMTNFPFLVVGVLGLVLALEEGVFNISSQGEVWTWALFYAGIAGVAFGSAYYHLKPDDHRVLWDTLPMMVAFSSLLSSLVVERLGQRIGLCCMFALNLAAFLCVIYERIYNDVRFCMMFQLTLPLAIPVIAVLYRSKYTHSRYWFFSTGIYLLAKFEGATDRKLYHVNNYIISGHSLEHLCLALIPILLSVMLINRELKFQRLVDHKDRP*

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