Glyma04g05350 - SoyBase

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Report for Sequence Feature Glyma04g05350

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4075247
stop:	4079558
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11790	AT	Annotation by Michelle Graham. TAIR10: N-MYC downregulated-like 2 \| chr5:3799682-3802496 FORWARD LENGTH=344	SoyBase	E_val: 0	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2931	KOG	Differentiation-related gene 1 protein (NDR1 protein), related proteins	JGI		ISS
PTHR11034	Panther	N-MYC DOWNSTREAM REGULATED	JGI		ISS
PTHR11034:SF3	Panther	N-MYC DOWNSTREAM REGULATED-RELATED	JGI		ISS
PF03096	PFAM	Ndr family	JGI		ISS
UniRef100_G7IB94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein SF21 n=1 Tax=Medicago truncatula RepID=G7IB94_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTW1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTW1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05350

Paralog	Evidence	Comments
Glyma06g05420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g050700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05350

Limit To All Plant Sequences

>Glyma04g05350.1   sequence type=CDS   gene model=Glyma04g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATTCAGTGTCGGTGGACATGGAAGCCATCTCTCCTCCACCCGAGGAACATGTTGTTAGAACTCGTCATGGTTGTGTCTCAGTTGCTGTGTATGGGGACCAGGACAAGCCAGCGCTTATCACGTATCCTGATTTGGCTTTAAATTATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCAGAAGCCTGTTCATTGCTGCTCCACAATTTCTGCATATATCATATTAGTCCACCTGGGCATGAGTTGGGAGCTGCTGCCATTGATCCAGATGATCCAATTCTTTCTGCTGATGACTTGGTTGATCAAATAGCTGAAGTTCTTAACTATTTTGGTCATAGTACAGTTATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTACCTTATTTGCTATGAAGTATAGACATCGTGTTCTTGGTTTGATACTTGTTTCTCCTTTATGTAAAGCACCATCTTGGACTGAATGGTTGTACAACAAGGTCATGTCAAATTTACTCTACTTTTATGGCATGTGTGGGGTGGTAAAAGAAATATTGCTAAAGCGGTACTTCAGCAAGGAAGTTCGAGGCAGTGATTATTTGCCAGAGTCAGATATAGTTCAAGCATGCCAAAGGTCATTAGACGAGAGGCAGAGTTTGAATGTGTGGCGGTTCCTTGAAGCAATTAATGGGAGATATGACATAAGTGAAGGATTGAGAAAATTAGAGTGTCGTTCACTAATTTTTGTTGGAGATATGTCTTGCTTTCACGGTGAGGCTCTCCATATGACATCAAAGTTGGATAGACGACTCAGTGCTTTAGTCGAGGTTCAAGCGTGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTAATACCGATGGAGTATTTTCTCATGGGATATGGCTTGTACAGACCATCTAAGCTGAGTGTCAGCCCAAGAAGTCCCCTGAGTCCCTCTTGCATTTCTCCTGAGCTTTACTCCCCAGAAAGTATGGGTTTGAAATTGAAACCAATAAAGACACGAATTTCCGAGGAGATATAG

Predicted protein sequences of Glyma04g05350

Limit To All Plant Sequences

>Glyma04g05350.1   sequence type=predicted peptide   gene model=Glyma04g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSVSVDMEAISPPPEEHVVRTRHGCVSVAVYGDQDKPALITYPDLALNYVSCFQGLLFCPEACSLLLHNFCIYHISPPGHELGAAAIDPDDPILSADDLVDQIAEVLNYFGHSTVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYFYGMCGVVKEILLKRYFSKEVRGSDYLPESDIVQACQRSLDERQSLNVWRFLEAINGRYDISEGLRKLECRSLIFVGDMSCFHGEALHMTSKLDRRLSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSKLSVSPRSPLSPSCISPELYSPESMGLKLKPIKTRISEEI*

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