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Report for Sequence Feature Glyma04g05340

Feature Type:gene_model
Chromosome:Gm04
Start:4062120
stop:4065101
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11770AT Annotation by Michelle Graham. TAIR10: NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218 SoyBaseE_val: 1.00E-122ISS
GO:0006120GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, NADH to ubiquinone SoyBaseN/AISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005747GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I SoyBaseN/AISS
GO:0008137GO-mf Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016651GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H SoyBaseN/AISS
GO:0048038GO-mf Annotation by Michelle Graham. GO Molecular Function: quinone binding SoyBaseN/AISS
GO:0051539GO-mf Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding SoyBaseN/AISS
KOG1687 KOG NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit JGI ISS
PTHR11995Panther NADH DEHYDROGENASE JGI ISS
PF01058PFAM NADH ubiquinone oxidoreductase, 20 Kd subunit JGI ISS
UniRef100_B9RRU5UniRef Annotation by Michelle Graham. Most informative UniRef hit: NADH-plastoquinone oxidoreductase, putative n=1 Tax=Ricinus communis RepID=B9RRU5_RICCO SoyBaseE_val: 2.00E-129ISS
UniRef100_I1JTW0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTW0_SOYBN SoyBaseE_val: 2.00E-155ISS

Expression Patterns of Glyma04g05340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05340
ParalogEvidenceComments
Glyma06g05410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g050600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g05340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g05340
>Glyma04g05340.1   sequence type=CDS   gene model=Glyma04g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTCTGAGTCGAGCCTCTTCACGCTTCCCTCAGCTGGTTTCCCCTCAAAGAGTTGTTTCCCTCCACACAACGCTCCCATCTCTTAACGCATCAACATCCACACCCACGCCCGCCCCATATGCCCCGCCACCGCCTCCGTCCGCTTCCCCTCCCGCCGGCGTGTCGAAGGCGGCGGAGTTCGTGATCTCGAAGGTTGACGATCTGATGAACTGGGCCCGGCGCGGCTCCATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAAATGATGCACACCGGCGCCGCCCGCTACGATCTCGACCGCTTCGGCATCATTTTCAGGCCCAGCCCTCGCCAGTCTGATTGCATGATCGTCGCTGGCACTCTCACCAACAAGATGGCTCCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAGCCTAGATGGGTTGTCTCAATGGGAAGTTGTGCTAATGGAGGAGGATACTACCATTACTCTTACTCCGTAGTTCGGGGATGTGACAGGATTGTTCCTGTTGACATATATATTCCAGGCTGTCCTCCAACTGCTGAGGCTTTGCTGTATGGACTCCTCCAGCTGCAGAAAAAGATCAATAGGCGCAAAGACTTCCTCCATTGGTGGACAAAGTGA
Predicted protein sequences of Glyma04g05340
>Glyma04g05340.1   sequence type=predicted peptide   gene model=Glyma04g05340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLSRASSRFPQLVSPQRVVSLHTTLPSLNASTSTPTPAPYAPPPPPSASPPAGVSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTK*






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