Glyma04g05290 - SoyBase

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Report for Sequence Feature Glyma04g05290

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4042963
stop:	4044137
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25900	AT	Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr2:11041817-11042764 FORWARD LENGTH=315	SoyBase	E_val: 7.00E-76	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14493	Panther	UNKEMPT-RELATED	JGI		ISS
PF00642	PFAM	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	JGI		ISS
UniRef100_G7J714	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J714_MEDTR	SoyBase	E_val: 1.00E-84	ISS
UniRef100_I1JTV7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTV7_SOYBN	SoyBase	E_val: 3.00E-171	ISS

Expression Patterns of Glyma04g05290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g050300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05290

Limit To All Plant Sequences

>Glyma04g05290.1   sequence type=CDS   gene model=Glyma04g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCCAAACGTTCAAATCCCTACCTGGGACGCGGACGGAGGAGGAGCACTCTCCCCGTCGATCTCTTCCAATGCTGACACGTGCTCATTATTCTCCTCCGACCATTTCCGAATGTTCCAGTTCAAGGTGCGGAACTGTCCACGTGGCAGGTCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGTGACCCCCGCAAGTACCACTACTCAGGCACCTCCTGCCCCGATTACCGGAAGGGGAACTGCAAGAGGGGCGACACGTGTCAGTTCGCGCACGGCGTCTTCGAATGCTGGCTCCACCCTTCTCGCTACCGGACCCAGCTCTGCAAAGACGGAACAAATTGCCGCCGCAGAGTGTGCTTCTTCGCCCACACCAGCGACCAACTCCGCGTCGTGACGGATTCATCGTCGTCGTCGTTTGTTTCCTCTCCCACTTCGGTGCTCATTAACTCTTCGTTCTCCGATTCTTCGCCGTACAGCTTCGTCCGCGGAATAGTTAAACTGGATGAGGAAGGGTCGTATTCGGGTCTGACCCGTTGCGTGTTCGGGTCGCCACGTGGCGGGTTTATGAGTGTGAATGGGTGCGAGGAGGAGCCTGCGATGGAGAGGGTGGAATCGGGGAGAGACATTAGAGCGAGGATATATGCGAAGCTTAGTAGGGAGAATTCCATTGGATGA

Predicted protein sequences of Glyma04g05290

Limit To All Plant Sequences

>Glyma04g05290.1   sequence type=predicted peptide   gene model=Glyma04g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPNVQIPTWDADGGGALSPSISSNADTCSLFSSDHFRMFQFKVRNCPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTSCPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTQLCKDGTNCRRRVCFFAHTSDQLRVVTDSSSSSFVSSPTSVLINSSFSDSSPYSFVRGIVKLDEEGSYSGLTRCVFGSPRGGFMSVNGCEEEPAMERVESGRDIRARIYAKLSRENSIG*

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