SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20430 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr3:7121480-7123074 FORWARD LENGTH=265 | SoyBase | E_val: 6.00E-67 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3948 | KOG | Mediator of U snRNA nuclear export PHAX | JGI | ISS | |
| PTHR13135 | Panther | CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 | JGI | ISS | |
| PF10258 | PFAM | PHAX RNA-binding domain | JGI | ISS | |
| UniRef100_G7JMS7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Medicago truncatula RepID=G7JMS7_MEDTR | SoyBase | E_val: 4.00E-76 | ISS |
| UniRef100_I1K8B7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8B7_SOYBN | SoyBase | E_val: 7.00E-155 | ISS |
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Glyma04g05241 not represented in the dataset |
Glyma04g05241 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g049800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g05241.1 sequence type=CDS gene model=Glyma04g05241 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGACAACTTAGATGATGATGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATGCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAATGAAGCAAATCAAGAACCTCTCAGTAAGAACCAAAAACGTAGAGCTAATAAGAAGAAGAATAAGAAGAAGAGGAAGGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACGTGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGTGTCTCTGCATTAAGCGATCTCGTCAATGAGGTGGATGCAATACAGGCTTGCGGAGGCCAGAAAACTGCTGATGGTAGACGATTCCGGACTGGGGGTGGAATATTGTGGAGCATCTTAAAAGTCAGGGAACCAAAGGTCTTCAAAGAGATAATGAAAAAAGCAAAGGAGTTTGAGAAACAATTCAGGCAGCCTAATGTGATGCAACGACCCGCGTCAAAGAAAGAGGATTCTTCTCAAGGAGTACCCTTTTCATTTTCTGGCAGGGATCTGGGCAATGTTTCGGACAGCGATATTCTTGCATCCCAGATGCAAAATCAACATCAGCCGGCAACTTCTGAAGAAAAGCCTATGTCTGTTCATGATAGGTTAAGGATACCCGTATCATATGATGATGATCTGCTTGGAGAGAATCCAGTCAATGATACAACCTGA
>Glyma04g05241.1 sequence type=predicted peptide gene model=Glyma04g05241 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDGDNILDAIYEEDNLDDDVDMVDVEEGELVEPDAQNVLGQSSAGDINEANQEPLSKNQKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVNEVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPNVMQRPASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSYDDDLLGENPVNDTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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