Glyma04g05230 - SoyBase

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Report for Sequence Feature Glyma04g05230

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3990025
stop:	3990956
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26010	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr5:9085512-9087372 REVERSE LENGTH=331	SoyBase	E_val: 1.00E-19	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF94	Panther	PROTEIN PHOSPHATASE 2C DELTA	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9RRV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9RRV1_RICCO	SoyBase	E_val: 2.00E-28	ISS
UniRef100_I1JTU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JTU7_SOYBN	SoyBase	E_val: 8.00E-157	ISS

Expression Patterns of Glyma04g05230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g05230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05230

Limit To All Plant Sequences

>Glyma04g05230.1   sequence type=CDS   gene model=Glyma04g05230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGAAGCAACAACCAAGGTTCTAAGTGGACTTTGCTCTGCTTACACTAAACAAGGTAGCAAAGGACTTAACCAATTGCTCCTTTACAAGGGTTATGGAACGGAAAACGCGGCATTTTGTGGCGTATTTGATGGGCATGGAAAGAATGGTCACGTAGTAAGCAAAATAGTAAACAGCCGTTTGTCATCATCACTCATACGGAGCCAAAAGAAACTCCAAACAAGAATTCTCACGAATGGGAAAGAGGCTATTCTTGATGCTTTCAGAGTGATGAACAAGGAGATCAAGCTACAAGAGAATCTAGACTGCTCTTGCAGTGGAACTACTGCTGTATTTGCGCTGAAGGAAGAACCACGCATCCAGCGAGTGTGGTTACCCAATGAGACCAGATATTTATTGTATTTGCAAGTGTGGGATGTACTAAGCAACAAGGAGGTTTGCTCAATTGTGTGGGGGCAGAAACTGAGAAAGAAGCAGCATGGAAACACAAGTATCCTTCTTCTAAGGTTGATGACTGCACTGTGGTTTGCCTCTTCCTCCACAAGAAACCACAGTTTCTTGATACAAGTTATAGAAACTAGAAAGTTGATAAGAGGATGTATTGCATCTGTTTTTCTAGTAGTTTCTCTCTTTTACTTTATAAATATCCAT

Predicted protein sequences of Glyma04g05230

Limit To All Plant Sequences

>Glyma04g05230.1   sequence type=predicted peptide   gene model=Glyma04g05230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FEATTKVLSGLCSAYTKQGSKGLNQLLLYKGYGTENAAFCGVFDGHGKNGHVVSKIVNSRLSSSLIRSQKKLQTRILTNGKEAILDAFRVMNKEIKLQENLDCSCSGTTAVFALKEEPRIQRVWLPNETRYLLYLQVWDVLSNKEVCSIVWGQKLRKKQHGNTSILLLRLMTALWFASSSTRNHSFLIQVIETRKLIRGCIASVFLVVSLFYFINIH

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