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Report for Sequence Feature Glyma04g05200

Feature Type:gene_model
Chromosome:Gm04
Start:3949736
stop:3952620
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06710AT Annotation by Michelle Graham. TAIR10: homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336 SoyBaseE_val: 7.00E-55ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0483 KOG Transcription factor HEX, contains HOX and HALZ domains JGI ISS
PTHR24326Panther FAMILY NOT NAMED JGI ISS
PTHR24326:SF218Panther JGI ISS
PF00046PFAM Homeobox domain JGI ISS
PF02183PFAM Homeobox associated leucine zipper JGI ISS
UniRef100_B9R6T5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9R6T5_RICCO SoyBaseE_val: 1.00E-66ISS
UniRef100_UPI0002339686UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339686 related cluster n=1 Tax=unknown RepID=UPI0002339686 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g05200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g05200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g049300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g05200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g05200
>Glyma04g05200.2   sequence type=CDS   gene model=Glyma04g05200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTTTGATATCTCTAAACCAGGGCTTCGACTTGGTCTTGGTCTTGGTCTCCATGATGATCACTCATCAGAAAATTGCATGAAGACCAATGAACAAAGCCAAAGGCAAAGACAAAGCCAGAAGAAAAAGGAAACAGATCCATGTAACAAGGCTTACCCATCACTTAAGTTAGGACCACCCGATGATGAGGCAAACAATAATAATCAACAAATTACAAATATTGAATCCGATGAATACTATTATTTCCACCCACATGCCTCTTCTAGATCTCCAAGTGCAGTGTCTTCATTTTCCAACTCATCTAGCATCATCAAGAGAGAGAGAGAACAACTTGAGTTAGAGGTAGAGAAGATTTCGCTGTCAAGGGATTTTGTCGATGTTGACGAAAATGGTAACCCCAAGAAGAAACTTAGGCTCACCAAAGAACAATCTGCAGTCTTAGAAGATAGCTTCAAAGAGCATTATACTATCAGTCCGAAACAGAAGCAAGAATTGGCAAAGAAACTGAATCTTCGGACTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCGAGGACAAAACTGAAACAAACCGAAGTGGAGCGTGAGTTACTGAAAAAGTGCTGTGAAACTCTAACTGAGGAGAACAAGATGCTGGAAAAAGAGTTGCAAGAGCTCAAATCGACGAAAACATCGATGGGACCCTTTTATATGCAGCTTCCAGTGGAAAGCCTTAGAATATGCCCTTCGTGTGAGAGAATAAGCGGTGGCAACAATGGCTCCTCTCCCACAACGGCTTTGCTTGAAGCCCCAAAGGCCCATAAAGATCAGCCCTTCTATAAAAATAACTACACATTCACCCAATCATCCGCAGCTTTTGCTAGCTAG
Predicted protein sequences of Glyma04g05200
>Glyma04g05200.2   sequence type=predicted peptide   gene model=Glyma04g05200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFDISKPGLRLGLGLGLHDDHSSENCMKTNEQSQRQRQSQKKKETDPCNKAYPSLKLGPPDDEANNNNQQITNIESDEYYYFHPHASSRSPSAVSSFSNSSSIIKREREQLELEVEKISLSRDFVDVDENGNPKKKLRLTKEQSAVLEDSFKEHYTISPKQKQELAKKLNLRTRQVEVWFQNRRARTKLKQTEVERELLKKCCETLTEENKMLEKELQELKSTKTSMGPFYMQLPVESLRICPSCERISGGNNGSSPTTALLEAPKAHKDQPFYKNNYTFTQSSAAFAS*






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