Glyma04g05170 - SoyBase

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Report for Sequence Feature Glyma04g05170

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3912317
stop:	3914439
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49690	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 84 \| chr3:18427941-18429100 FORWARD LENGTH=310	SoyBase	E_val: 9.00E-89	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_I1JTU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTU0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J7FAY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor MYB1.1 n=1 Tax=Quercus suber RepID=J7FAY5_QUESU	SoyBase	E_val: 5.00E-131	ISS

Expression Patterns of Glyma04g05170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05170

Paralog	Evidence	Comments
Glyma06g05260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g048900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05170

Limit To All Plant Sequences

>Glyma04g05170.1   sequence type=CDS   gene model=Glyma04g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGGCACCTTGCTGTGACAAATCAAACGTGAAGAAAGGCCCTTGGTCGCCAGATGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGGAACTGGATTGCTTTGCCACAAAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAATATCAAACACGGTGGTTTCTCTGAAGAAGAAGACAACATCATATGCAGCCTCTACGTTTGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCGCCGTAAGGAACTACAGGCACGAAACAAAGGAAACGGTGTCGTTGAGCACGAGAACAATTCCTCACTCTTGCTTCAGGAAAACAGTGCTCAACAATTACATCCATGTTGGCCACAGATTCCTGCAGTGTTGCCACTTTCACCCTACACAAACCAAAGTCCAAGTTTCAACGACCAAGACTCTATTAGAAAGCTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACGCATCCTTGACGGGTTGAATCTTCAGTTCCCACATGGTTCTCTCTCATCAACACAGCTTCTTCAAGAGGAGCAAGTCCATTTTGTTTCTTCTGCAGGGTGCATGAACTCTATTGGCAACAACCAAGTACAGTTTGGTCAGAGCAATGAGTACCGTGCTGAGTTGGTGCAAGGACAAAGCAGTTTCACTACCACTACAATTGGGGAAATGGTTTCTGCTAATGATTATTCTCAAAGGTTATTAGGTGGGTCGTTGGAGTTCTTCTATGGGGAGGAAATGATTACCGATAAGATAATGGGTGGTGCTTGTGCTTCTTCAAGTTGTGGACAAAGTACTGATTGGGGTGAAACCAGTTCTCTGATTTATCCTCCTCTTGTTGCTTCGAATTACGAGGGTGTGCGTCAAGAGATGCCACGAGAATGTGTTTTTCAAGAGTTAAGCTACCCGGGGGCACAATAG

Predicted protein sequences of Glyma04g05170

Limit To All Plant Sequences

>Glyma04g05170.1   sequence type=predicted peptide   gene model=Glyma04g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRAPCCDKSNVKKGPWSPDEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVCIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKRRKELQARNKGNGVVEHENNSSLLLQENSAQQLHPCWPQIPAVLPLSPYTNQSPSFNDQDSIRKLLIKLGGRFSDDYQRILDGLNLQFPHGSLSSTQLLQEEQVHFVSSAGCMNSIGNNQVQFGQSNEYRAELVQGQSSFTTTTIGEMVSANDYSQRLLGGSLEFFYGEEMITDKIMGGACASSSCGQSTDWGETSSLIYPPLVASNYEGVRQEMPRECVFQELSYPGAQ*

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