SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G58520 | AT | Annotation by Michelle Graham. TAIR10: lipases;hydrolases, acting on ester bonds | chr1:21733543-21738165 FORWARD LENGTH=746 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016298 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipase activity | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| KOG1134 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13018 | Panther | PROBABLE MEMBRANE PROTEIN DUF221-RELATED | JGI | ISS | |
| PTHR13018:SF5 | Panther | RSN1(YEAST)-RELATED PROBABLE MEMBRANE PROTEIN | JGI | ISS | |
| PF02714 | PFAM | Domain of unknown function DUF221 | JGI | ISS | |
| UniRef100_F4IBD7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipase/hydrolase n=2 Tax=Arabidopsis thaliana RepID=F4IBD7_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339684 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339684 related cluster n=1 Tax=unknown RepID=UPI0002339684 | SoyBase | E_val: 0 | ISS |
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Glyma04g05160 not represented in the dataset |
Glyma04g05160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g048800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g05160.1 sequence type=CDS gene model=Glyma04g05160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATTGCTGCTCTTTTAACTTCTGCTGGAGTTAACATTGCTGTGTGCGTGGTGCTCTTTTCACTCTATTCAGTATTGCGGAAACAACCCAGCAATGTCCGTGTGTACTTTGGAAGAAGGGTAGCATCTCGGTGTTCAAAAAGCCGTGATCTTTGTTTGGAAAGATTTGTTCCCTCTCCGACTTGGGTAATGAAAGCATGGGAAACAACTCAAGATGAAATGCTGAGTACTGGTGGCCTGGATGCGGTGGTTTTTAGCAGAATGGTTGTGTTCAGTATTCGAGTATTTTCTGTTGCTGCTGTCATCTGCACTACTCTAGTGCTTCCAGTGAATTATTATGGTCGGGACAGAATACATAAGAATATACCTTTCGAATCACTGGAAGTATTTACCATTGAGAATGTTATAGAAGGATCTCGGTGGCTTTGGGCTCATTGTCTTGCGTTATACATCATAACTTTAACAGCTTGTTCTCTTCTTTACTGCGAATACAAGAGCATTACTAATTTGCGGCTAGTACATATTACTGCATCGTCGCCAAATCCTAGTCATTTTACAATTCTTGTTCGAGGAATACCCTGGTCTTCAGAACAATTATACTGCGATACAGTGAAGAAGTTTTTCGCATTTTATCACGCACAAACATATTTGTCGCACCAAATAGTGTACAAGTCTGGTACATTTCAGAAACTGAAGGATGACACAGAATATATGTGTAAGATGCTCAGTGGTAGTTGTGGTTCAATGGAACTGCCGTGTAAGCCAAGCTTTACGCAATGTTACTTTTGTGGAGGATCCACTAATTCTTTTAAGATTATTTCTAATGACATTGATAGTATGCATGGGAGGACAAGCTACACTGACCTGCATACAAATGCAAGAAAAAAGGAATGTGCAGCTGCTTTCGTGTTCTTTAAAAGTCGGTATGCTGCTCTTACGGTTGCCCAAAATCTTCAAACATCAAATCCCATGTTATGGGTCACAGACCTAGCTCCTGAACCACCGGATGTTTACTGGGCCAACCTTTGCATACCATACAGGCAACTTTGGATCCGTAAGATATCTATATTTGTGGCTTCTGTCACCTTCGTGCTTGTATTCCTTATCCCTGTCACATTCGCACAAGGCTTGACTCAACTGGACAAGCTAGAGAGAATGTTCCCTTTTCTGGCAGGAACACTTCAAAAGAAATTTGTGATGCAGCTGGTGACTGGTTACTTGCCAAGTGCGATTTTGGTTTTATTTTTATATGCTGTTCCACCAGTGATGATGCTCTTTTCAACAGTGGAGGGATCTGTTTCTCGTAGTGGAAGGAAGAGGAGTGCATGCACCAAATTTTTGTACTTCACAATTTGGAATGTGTTTTTCGTTAATGTTTTTGCCGGGTCTGTTATCAGCCAACTCGCAGTCTTTAGTAGTATAACAGAATTACCTGCCCAACTTGCCAAGGCTGTCCCAGTGCAGGCTACCTTCTTCACAACGTATGTTTTATCATCTGGTTGGGCAAGTTTGGCATTTGAAACTATGCAACTCTATCCACTTTTCTGCAATCTGTTCCAGAGATTCATACTCGGGTATAAGGAGGATACGATGAATGGCAACCTAACTTTTCCATACCATACAGAAGTTCCAAGGATCTTACTGTTTGGATTCCTTGGGTTCACCTGTTCTATTCTGGCACCCCTAATATTGCCCTTCTTATTGTTTTACTTTGTACTTGCGTACTTCGTTTACCGGAACCAGATTCTTAACGTATACATTAGAAAATATGATAGTGGGGGACAGTTATGGCCCTTGGCTCACAACACAACGGTCTTTTCGTTGCTCTTCGCTCAAGTTATTGCACTTGGGGTGTTTGGACTAAAACAATCACCAGTTGCATCTGGATTTACCATTCCACTGCTGATTTGTACCATTCTATTTAACCAATATTGTAGGCAGCGATTTCTCCCAGTATTTCAGAGAAATGCAACACAGGTTCTTATTGACATGGATCGGAGAGATGAACGGTGTGGGAGAATGGATCAGATTTATGAACAAGTGCAATCAGCATACTGCCAGGCCACTCATTCTACTCAATCCGAATGTTTCAGCAGTCATCAAGGAGACAGGGAACATGTTAGAACTCCAGAAGAATTGGAGACAGGCAAGGAAATTAGCCAAAAAGATTTGTCATGGCCGCCAGTTCTTCGTAGTTTGAGTTTGGATAATTCGGTACTTGGCGGGAAGTAA
>Glyma04g05160.1 sequence type=predicted peptide gene model=Glyma04g05160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDIAALLTSAGVNIAVCVVLFSLYSVLRKQPSNVRVYFGRRVASRCSKSRDLCLERFVPSPTWVMKAWETTQDEMLSTGGLDAVVFSRMVVFSIRVFSVAAVICTTLVLPVNYYGRDRIHKNIPFESLEVFTIENVIEGSRWLWAHCLALYIITLTACSLLYCEYKSITNLRLVHITASSPNPSHFTILVRGIPWSSEQLYCDTVKKFFAFYHAQTYLSHQIVYKSGTFQKLKDDTEYMCKMLSGSCGSMELPCKPSFTQCYFCGGSTNSFKIISNDIDSMHGRTSYTDLHTNARKKECAAAFVFFKSRYAALTVAQNLQTSNPMLWVTDLAPEPPDVYWANLCIPYRQLWIRKISIFVASVTFVLVFLIPVTFAQGLTQLDKLERMFPFLAGTLQKKFVMQLVTGYLPSAILVLFLYAVPPVMMLFSTVEGSVSRSGRKRSACTKFLYFTIWNVFFVNVFAGSVISQLAVFSSITELPAQLAKAVPVQATFFTTYVLSSGWASLAFETMQLYPLFCNLFQRFILGYKEDTMNGNLTFPYHTEVPRILLFGFLGFTCSILAPLILPFLLFYFVLAYFVYRNQILNVYIRKYDSGGQLWPLAHNTTVFSLLFAQVIALGVFGLKQSPVASGFTIPLLICTILFNQYCRQRFLPVFQRNATQVLIDMDRRDERCGRMDQIYEQVQSAYCQATHSTQSECFSSHQGDREHVRTPEELETGKEISQKDLSWPPVLRSLSLDNSVLGGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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