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Report for Sequence Feature Glyma04g05150

Feature Type:gene_model
Chromosome:Gm04
Start:3888061
stop:3894000
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37770AT Annotation by Michelle Graham. TAIR10: 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469 SoyBaseE_val: 0ISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0042218GO-bp Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0016847GO-mf Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
KOG0256 KOG 1-aminocyclopropane-1-carboxylate synthase, and related proteins JGI ISS
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI ISS
PTHR11751:SF26Panther TRANSCRIPTION REGULATOR AMINOTRANSFERASE GNTR-RELATED JGI ISS
PF00155PFAM Aminotransferase class I and II JGI ISS
UniRef100_B9GNK7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate n=1 Tax=Populus trichocarpa RepID=B9GNK7_POPTR SoyBaseE_val: 0ISS
UniRef100_I1JTT8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTT8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g05150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05150
ParalogEvidenceComments
Glyma06g05240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g048700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g05150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g05150
>Glyma04g05150.1   sequence type=CDS   gene model=Glyma04g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGCTGTCTAGGAAGGCTAGTCATGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGGTGGCAAGAGTACGAGAAGAATTCTTATCACCCCATTCAAAATCCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATTCTGACATAGTGGGGATGAAGAAAGATGGAGTATCCGTCTTTAGAGAGCTTGCTCTATTTCAAGATTACCACGGGTTACCTGCTTTAAAAAATGAACTGGTGGACTTTATGGCAAAAATAAGAGGAAATGGTGTGAAATTTGCTTCAGAGAAGCTGGTTCTCACAGCCGGCGCAACTCCCGCCAATGAGATTCTGATGTTTTGCCTTGCTGATCCTGGGGAGGCTTTCATTCTTCCCACACCCTATTATCCTGGGTTTGATAGAGATCTAAAATGGAGAACTGGGGTTGAGATTGTTCCAATGCATTGCTCCAGCTCAAATGGCTTTAGAATCACTTCCTCTGCTTTAGAACAAGCCTATCAACAAGCACAAAAACTGAATCTCAAAATCAAAGGGGTCTTAGTAACTAACCCCTCAAACCCACTGGGCATAACCATGACCAAAACTGAGCTCAACCACCTAGTAGATTTCGCTATTGACAAGAACATTCACATAATAAGCGACGAAATCTACTCGGGTACGGTCTTCGACTCACCCAAATTCGTAAGCATCACAGAAGTTGTGAACGAGAGAATTACTAGTGTCAGCAACAATAACATTTGGAACCGCATTCACATAGTTTATAGTCTCTCCAAAGACCTTGGCATACCAGGATTTCGTGTGGGAATGATTTACTCCAACAACGAAACGGTTGTAACTGCTGCCACCAAAATGTCAAGCTTCGGATTGGTGTCCTCACAAACTCAGTATTTGGTGGCAAACTTGCTTAAGGACAAGAAATTCACTTGCAAGTACATGGAAGAGACTCAAAAGAGACTGAAGAGGCGCAAGGAGAAGCTTGTGTCTGGCCTGAGAAACGCTGGGATTAGGTGTTTGGAAAGCAATGCTGGGTTGTTCTGTTGGGTTGACCTGAGACACTTGTTAGGCTCTGCCACTTTTGAGGCAGAGAAGGAGCTTTGGATGAAGATTCTTTGCAAAGTTGGTTTAAACATATCTCCTGGCTCTTCTTGCCACTGCTGTGAACCCGGGTGGTTCAGGGTATGCTTTGCCAACATGTCTCAAGACACGTTAGAAGTTGCAATGCGACGCATGAAGGCTTTTGCAGACTCAACCATCTCTACTAGTGTCTTAAGAGGATCCATTGCTAAGTGGGAAAACTAA
Predicted protein sequences of Glyma04g05150
>Glyma04g05150.1   sequence type=predicted peptide   gene model=Glyma04g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMLSRKASHDSHGQDSSYFLGWQEYEKNSYHPIQNPTGIIQMGLAENQLSFDLLKSWLRRNSDIVGMKKDGVSVFRELALFQDYHGLPALKNELVDFMAKIRGNGVKFASEKLVLTAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSSALEQAYQQAQKLNLKIKGVLVTNPSNPLGITMTKTELNHLVDFAIDKNIHIISDEIYSGTVFDSPKFVSITEVVNERITSVSNNNIWNRIHIVYSLSKDLGIPGFRVGMIYSNNETVVTAATKMSSFGLVSSQTQYLVANLLKDKKFTCKYMEETQKRLKRRKEKLVSGLRNAGIRCLESNAGLFCWVDLRHLLGSATFEAEKELWMKILCKVGLNISPGSSCHCCEPGWFRVCFANMSQDTLEVAMRRMKAFADSTISTSVLRGSIAKWEN*






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