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Report for Sequence Feature Glyma04g05140

Feature Type:gene_model
Chromosome:Gm04
Start:3867494
stop:3871182
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g05140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65810AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26337833-26339144 REVERSE LENGTH=258 SoyBaseE_val: 1.00E-125ISS
GO:0010394GO-bp Annotation by Michelle Graham. GO Biological Process: homogalacturonan metabolic process SoyBaseN/AISS
GO:0045488GO-bp Annotation by Michelle Graham. GO Biological Process: pectin metabolic process SoyBaseN/AISS
GO:0000139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q9FH88UniRef Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB66910.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FH88_ARATH SoyBaseE_val: 1.00E-90ISS
UniRef100_UPI0002339532UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339532 related cluster n=1 Tax=unknown RepID=UPI0002339532 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g05140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05140
ParalogEvidenceComments
Glyma06g05220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g048600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g05140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g05140
>Glyma04g05140.1   sequence type=CDS   gene model=Glyma04g05140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCGGAGACCGGTGAATCCGTCTCGGCGATTCGGAGACAGTGGAGGTGGATTGTTTTCATCTTCGAAATCAAAGTCGTCACCGGTTGTGTCGGTTGGGCTCATAATTGTGGGATGCCTGTTTCTCATTGCGTATGTGTACAAGGGCTCAGGCGTTTTTGGTAGCCGTTTGGAGTCTGTGAGCAGGGTTGAAGGTGATTATTTGTGTGCTGGAGAGGTCCTACGAGCAATTCCCATTTTGCAGAAAGCATATGGTGATAGCTTACATAAAGTTTTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTGCTAAAGGAGGAGGAAACTGAAGCCTGGGGTATAGAACCTTATGATATAGAGGATGCTGATGGTAATTGCAAAACACTTATCGGCAAAGGCATTGTGCGTATGGCTGATATCAAGTTTCCTCTTCCATACAGGCCAAAATCTTTCTCTCTTGTAATTGTTTCGGATGCCCTTGATTTCTTATCTCCCAGATACCTTAACAAAACTCTTCCAGATTTGGCAAGGGTATCAGCTGATGGAATAGTGATATTTACTGGTTTTCCAGATAATCAAAAGGCTAAGGTTGCAGATGTTTCTAAATTTGGAAGAACAGCTAAGATGAGGAGTTCATCCTGGTGGGTTCGGTTTTTCCTTTCGATTAACTTAGAGGAGAACGAAACTGCTTCCAAAAAGTTTGCACAGGCTTCAACTAAGAGTTCATACATTCCAAATTGCCAGATATTCCACCTGAAGTCTCTCCATTGA
Predicted protein sequences of Glyma04g05140
>Glyma04g05140.1   sequence type=predicted peptide   gene model=Glyma04g05140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRRPVNPSRRFGDSGGGLFSSSKSKSSPVVSVGLIIVGCLFLIAYVYKGSGVFGSRLESVSRVEGDYLCAGEVLRAIPILQKAYGDSLHKVLHVGPDTCYVVSKLLKEEETEAWGIEPYDIEDADGNCKTLIGKGIVRMADIKFPLPYRPKSFSLVIVSDALDFLSPRYLNKTLPDLARVSADGIVIFTGFPDNQKAKVADVSKFGRTAKMRSSSWWVRFFLSINLEENETASKKFAQASTKSSYIPNCQIFHLKSLH*






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