Glyma04g05120 - SoyBase

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Report for Sequence Feature Glyma04g05120

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3854962
stop:	3863391
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G07990	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr4:4825650-4828937 REVERSE LENGTH=230	SoyBase	E_val: 1.00E-89	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF165	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_B9R6V3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6V3_RICCO	SoyBase	E_val: 4.00E-105	ISS
UniRef100_I1JTT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTT6_SOYBN	SoyBase	E_val: 2.00E-165	ISS

Expression Patterns of Glyma04g05120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05120

Paralog	Evidence	Comments
Glyma06g05210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g048400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05120

Limit To All Plant Sequences

>Glyma04g05120.2   sequence type=transcript   gene model=Glyma04g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGTTAGTTACGTTTGGCTTGTCAATAATAACTAAACTAACCGCGTATTTATTACGATTAACAAAATAAAAAGTTTCATGAGTGCGGAAGAGTCTGTAAATCGCGACTTCGAATGGCGAGTTGCGAATAAAGCGAAGATAGGAAAAGTGCGGCAAAGGATGTGTGTGTGCTTGTTTCATTGTTTGCATTGTGGAGTCGGTGATCGAAGTTGTTGAATGCTATCTTCATTTACGAAATGAAGGAGGACGCAGAGAAAGATAAAGGCAATGACAACAATAAGATTTGGGGAGCTATTCTCTTCGGCTTCATTGGCGCCACCGTCACTACCTTTGCGGTCGGTCAGCTGCGGAGGAGTGCTGAATGGTTCTATACTCAGTTATCGAGGACACAGTCATCGTGGAAAGGAGAGAGTGGTGGTTCTTTCCGATCAGCTTTTCAGGAAGAGGCATGGAGGAGGCACAATAAGCGCATGCAAGAGGAGTTAGAGGAGGAGATCGAAAGAGTGGAACGAATAAGGCGCATGCAAAGTGTGTTTAACAGAGAAAGGAATAAGTACAAAAGAAGCTATGAGAGCTGGAGGGAAAGTGGTCCTGGTGCATATCATCAGCATTCCCAAAGAGAAGATTGGTACTGGAAGGCTGATACATCCTTTAGAGACAAGAGGACTAATTATCGAGAAACTCCAAGAGAGAGTGGAAACTATGCATTATCACATCACTACTCAGTTTTGGGTCTTGACAGGTTTAGAAAAACTCCATATTCAGAAGCTGAGATTAAGACAGCATTTAGGACCAAGGCCAAGGAGTATCATCCTGATCAGAACCAGGATAATATAGTGGCTGCTGAGTCAAAGTTCAAGGAAGTGTTGACTTCATACGAGGCCATAAAACAGGAAAGAAGGAACCATCATACGTAGTTGCCTAAATCTGCCCAACTATCCTGGGACCGGAAAGGATGCTAGATTTGCATAACTCGTTTGGCTTGTACGAAGTCTGGTAATCAAGTATTCAATTTTTGGCAACATGACTTGATTGAGTGGCTATGTCATTGCCAAGCGTCGAATGCCGAGTAAACATAAGAAGGATGTATACGGAAGCCTTAGAAAGAGGCAGAGCCCTAGACCCAAATGCTTTCCGAAGGTTGAAATATTATCCCAAACAGAAATTGGCATAATTGTTCTTTCCATTTTAAGATGTTTATTGGTGTCTCTTTTATATTTCTTATTTAGTTTTTTTAGTACTTCATTTGAAATCTTGTTTTGGTCTTTCACTATTATTTTTAATTCTGGGGAAGGCCTAAGCCCCAAAATCCCTAGTATGTTTTCAAGTTATTCTCTTAACAGTCAAAATTTGCATCAATTTTGGAACCAGATGAGCTGAATTTGAGGTGATTCTTTGGAAAAAAAAATGTAAATTATATTAAATTTAAAATAATACAACAGTAAACGGGACATACTCCGCAACTAGAGAAAATCAAAA

Coding sequences of Glyma04g05120

Limit To All Plant Sequences

>Glyma04g05120.1   sequence type=CDS   gene model=Glyma04g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAGGACGCAGAGAAAGATAAAGGCAATGACAACAATAAGATTTGGGGAGCTATTCTCTTCGGCTTCATTGGCGCCACCGTCACTACCTTTGCGGTCGGTCAGCTGCGGAGGAGTGCTGAATGGTTCTATACTCAGTTATCGAGGACACAGTCATCGTGGAAAGGAGAGAGTGGTGGTTCTTTCCGATCAGCTTTTCAGGAAGAGGCATGGAGGAGGCACAATAAGCGCATGCAAGAGGAGTTAGAGGAGGAGATCGAAAGAGTGGAACGAATAAGGCGCATGCAAAGTGTGTTTAACAGAGAAAGGAATAAGTACAAAAGAAGCTATGAGAGCTGGAGGGAAAGTGGTCCTGGTGCATATCATCAGCATTCCCAAAGAGAAGATTGGTACTGGAAGGCTGATACATCCTTTAGAGACAAGAGGACTAATTATCGAGAAACTCCAAGAGAGAGTGGAAACTATGCATTATCACATCACTACTCAGTTTTGGGTCTTGACAGGTTTAGAAAAACTCCATATTCAGAAGCTGAGATTAAGACAGCATTTAGGACCAAGGCCAAGGAGTATCATCCTGATCAGAACCAGGATAATATAGTGGCTGCTGAGTCAAAGTTCAAGGAAGTGTTGACTTCATACGAGGCCATAAAACAGGAAAGAAGGAACCATCATACGTAG

>Glyma04g05120.2   sequence type=CDS   gene model=Glyma04g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAGGACGCAGAGAAAGATAAAGGCAATGACAACAATAAGATTTGGGGAGCTATTCTCTTCGGCTTCATTGGCGCCACCGTCACTACCTTTGCGGTCGGTCAGCTGCGGAGGAGTGCTGAATGGTTCTATACTCAGTTATCGAGGACACAGTCATCGTGGAAAGGAGAGAGTGGTGGTTCTTTCCGATCAGCTTTTCAGGAAGAGGCATGGAGGAGGCACAATAAGCGCATGCAAGAGGAGTTAGAGGAGGAGATCGAAAGAGTGGAACGAATAAGGCGCATGCAAAGTGTGTTTAACAGAGAAAGGAATAAGTACAAAAGAAGCTATGAGAGCTGGAGGGAAAGTGGTCCTGGTGCATATCATCAGCATTCCCAAAGAGAAGATTGGTACTGGAAGGCTGATACATCCTTTAGAGACAAGAGGACTAATTATCGAGAAACTCCAAGAGAGAGTGGAAACTATGCATTATCACATCACTACTCAGTTTTGGGTCTTGACAGGTTTAGAAAAACTCCATATTCAGAAGCTGAGATTAAGACAGCATTTAGGACCAAGGCCAAGGAGTATCATCCTGATCAGAACCAGGATAATATAGTGGCTGCTGAGTCAAAGTTCAAGGAAGTGTTGACTTCATACGAGGCCATAAAACAGGAAAGAAGGAACCATCATACGTAG

Predicted protein sequences of Glyma04g05120

Limit To All Plant Sequences

>Glyma04g05120.1   sequence type=predicted peptide   gene model=Glyma04g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEDAEKDKGNDNNKIWGAILFGFIGATVTTFAVGQLRRSAEWFYTQLSRTQSSWKGESGGSFRSAFQEEAWRRHNKRMQEELEEEIERVERIRRMQSVFNRERNKYKRSYESWRESGPGAYHQHSQREDWYWKADTSFRDKRTNYRETPRESGNYALSHHYSVLGLDRFRKTPYSEAEIKTAFRTKAKEYHPDQNQDNIVAAESKFKEVLTSYEAIKQERRNHHT*

>Glyma04g05120.2   sequence type=predicted peptide   gene model=Glyma04g05120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEDAEKDKGNDNNKIWGAILFGFIGATVTTFAVGQLRRSAEWFYTQLSRTQSSWKGESGGSFRSAFQEEAWRRHNKRMQEELEEEIERVERIRRMQSVFNRERNKYKRSYESWRESGPGAYHQHSQREDWYWKADTSFRDKRTNYRETPRESGNYALSHHYSVLGLDRFRKTPYSEAEIKTAFRTKAKEYHPDQNQDNIVAAESKFKEVLTSYEAIKQERRNHHT*

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