Report for Sequence Feature Glyma04g05100
Feature Type: gene_model
Chromosome: Gm04
Start: 3840307
stop: 3845175
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g05100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G07960 AT
Annotation by Michelle Graham. TAIR10: Cellulose-synthase-like C12 | chr4:4802628-4805114 REVERSE LENGTH=699
SoyBase E_val: 0 ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
GO:0016759 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity
SoyBase N/A ISS
PTHR10587 Panther
N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED
JGI ISS
PTHR10587:SF35 Panther
XYLOGLUCAN GLYCOSYLTRANSFERASE
JGI ISS
PF00535 PFAM
Glycosyl transferase family 2
JGI ISS
UniRef100_B9R6U7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9R6U7_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JTT4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTT4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g05100
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g05100
Paralog Evidence Comments
Glyma06g05190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g05100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g048100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g05100
Coding sequences of Glyma04g05100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g05100.1 sequence type=CDS gene model=Glyma04g05100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCACCGTTGTTCAATTGGGGGGTGAAGGACACTCACAGGGGAACCCCTGTGGTGGTGAAGATGGAGAACCCAAATTGGTCGATGGTGGAACTCGAGGGTCCCGAAGAAGAAGACTTAATGCTAACAAATTCACCTTCTTCGGGCGTTTCAAGAGACAAAGGGAGGGGCAAAAATGCCAAACAGCTCACGTGGGTTCTCCTCCTCAAAGCGCACCGCGCCGCGGGTTGCTTAACCTCCCTCGCCCCGGCATTGGTGGGCCTCGTCGCCGCCGTGAAGCGCCGCGTCGCCGCCGGAAAAACCGACGCCGACACCGGCGGAGGCAGGGAGAACGAAAACCCCGCCGTGAAGACGCGCTTCTATTCCTGCATCAAGCTCTTCCTCTGCCTCTCCGTGGTCCTCTTGGTTTTCGAAATCGCCGCGTACTTCGAAGGGTGGTATTTCGGCGCGGCGAGGTTTCAGCTGGAGCATTTGCTGTGGGCACCGTCCTTCGGAGTTAAGGGTTTCTTCGATTGGCTCTACGCAAGGTGGGTTTTCGTTCGCGTGGAGTATCTCGCTCCTCCTCTGCAGTTCTTGACCAATGCGTGCATCGTGCTCTTCCTTATCCAGAGTATGGATAGGCTTGTTCTCTGTTTGGGGTGTTTCTGGATCCGGTTTAAGAAGATCAAGCCTGTCCCCAAAGGTGGGGGTGTCGTAGATCTTGAATCTGGAGAAGAAAAGGGTTTCTCTTTTTCCCCAATGGTGCTCGTGCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAGTCGATTGCGGCGGTGTGTAATTTGGATTGGCCGAAGGGGAAGTTGTTGATTCAGGTTTTGGATGATTCGGATGACCCAACGACGCAGTCGTTGATAAAGGAGGAGGTGCAAAAGTGGCAGCAAGAGGGTGCCAACATTTTGTACCGGCATCGTGTGATTAGAGATGGGTACAAGGCTGGGAATTTGAAATCCGCCATGAATTGTAGCTACTTGAAAGACTACGAGTTTGTTGCAATTTTTGATGCAGATTTTCAGCCTACCCCGGATTTTCTCAAGAAAACCGTTCCTCATTTTAAGGATAATGATGATTTGGGGCTTGTTCAAGCGAGATGGTCATTTGTGAACAGGGATGAGAACCTGCTAACGAGGCTGCAGAACATTAACCTGTCTTTTCATTTTGAGGTGGAGCAGCAAGTCAATGGGATTTTCATTAACTTTTTTGGGTTCAATGGAACCGCGGGAGTGTGGAGGATCAAGACTTTGGAGGATGCCGGTGGTTGGTTGGAGAGGACAACTGTTGAGGACATGGACATTGCCGTCCGAGCTCATCTTCACGGTTGGAAGTTCATTTTCCTCAACGATGTTGAGTGCCAATGCGAGCTACCAGAATCTTATGAAGCTTACAGGAAACAGCAGCATAGATGGCATTCTGGGCCAATGCAACTGTTCCGTCTTTGTTTGCCTGATATCATCAGGGCCAAGATAAGTGTGTGGAAGAAATTCAACATGATATTCCTCTTCTTCCTTCTTAGAAAGCTGATATTGCCATTCTATTCATTCACCTTGTTTTGTATAATCCTGCCTATGACAATGTTCGTGCCGGAGGCCGAGCTTCCTGCGTGGGTTGTGTGTTACATCCCTGCTGCCATGTCTTTTCTCAACATTCTTCCAGCTCCAAAAGCCTTCCCCTTTATCGTCCCTTATCTCTTATTTGAGAACACCATGTCAGTTACCAAATTCAACGCCATGATCTCGGGCTTATTCCAGCTTGGTAGTGCATACGAGTGGGTGGTCACCAAGAAATCTGGTCGTTCCTCGGAGGGCGATTTGGTTTCATTGATTGAGAAAGGACCAAAGCATCAAAGAGGGTCCTCAGCACCTGATCTAGAGGAAATGAAAGAGGAACTTCGAAAGCAGGAGCAGCAAAAGGCCTCTAAGAAGAAGAAAAAACATAACAGAATATATATGAAGGAGCTTGCTTTGGCTTTTCTTCTTCTAACAGCCTCAGCAAGGAGTCTTCTCTCTGCTCAAGGGATTCACTTCTACTTTTTGTTATTCCAGGGAATATCATTCTTGTTGGTTGGTCTAGACTTGATTGGTGAACAGGTGGACTGA
Predicted protein sequences of Glyma04g05100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g05100.1 sequence type=predicted peptide gene model=Glyma04g05100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPPLFNWGVKDTHRGTPVVVKMENPNWSMVELEGPEEEDLMLTNSPSSGVSRDKGRGKNAKQLTWVLLLKAHRAAGCLTSLAPALVGLVAAVKRRVAAGKTDADTGGGRENENPAVKTRFYSCIKLFLCLSVVLLVFEIAAYFEGWYFGAARFQLEHLLWAPSFGVKGFFDWLYARWVFVRVEYLAPPLQFLTNACIVLFLIQSMDRLVLCLGCFWIRFKKIKPVPKGGGVVDLESGEEKGFSFSPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKGKLLIQVLDDSDDPTTQSLIKEEVQKWQQEGANILYRHRVIRDGYKAGNLKSAMNCSYLKDYEFVAIFDADFQPTPDFLKKTVPHFKDNDDLGLVQARWSFVNRDENLLTRLQNINLSFHFEVEQQVNGIFINFFGFNGTAGVWRIKTLEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPAAMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKGPKHQRGSSAPDLEEMKEELRKQEQQKASKKKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
