Glyma04g05091 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g05091

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3832070
stop:	3836259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05091

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10120	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:3304228-3305984 REVERSE LENGTH=366	SoyBase	E_val: 9.00E-63	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B9R6V4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6V4_RICCO	SoyBase	E_val: 2.00E-109	ISS
UniRef100_UPI0002339681	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339681 related cluster n=1 Tax=unknown RepID=UPI0002339681	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05091

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g05091 not represented in the dataset	Glyma04g05091 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05091

Paralog	Evidence	Comments
Glyma06g05181	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05091 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g048000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05091

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g05091

Limit To All Plant Sequences

>Glyma04g05091.2   sequence type=transcript   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGATCTTTGCTATTCATGAAGACAATTCAGGTATATTAGGAACGCATTCTGTGACTAGGGTGATGGAAAAACTACTTTTAATTACTTCAATGAAACTTAGTTCAAAATTCAAAATTATGTTTTTAACACACATCCAAACATTTTGGTCAATGCAAAAATCATGTTTGACCCTCAAGTTCGGAGCTTCAAAAGCACATCCATACACACTCTTAGTAGTAGAATTTGATGCCTTTGGTCATTTCTCAGAATGCACAGGTAGAGTTCTTCGCTCTTGTCCTGTCTTTTAAATCAAAACTAAGCTACAATGCTTGATGTTTAATCACTTGGTATGAAGCTTCAAACCTTCTAAGCCATTCAATGGGTCCTGCCCCGATTGTTGTTTGAATCCAATGGAGGAATGGGAATTTTATTAGTTGTTTTGTGAACAAAGTAGAAAAGGGAATCTGCTTTATTTGTAGTTTTGTTTAGCTATCAGTCTATCACGTTGCTTGTCTATGTCCACTTTATGCTCTGGAAGGTTCACTTTCCGTCTGAGGGGAAGCCTTTTTCCCTTTTTTTCCTGAACATCATAGGAATAGGCCTGATCCTACGATCTTTAAAGGAAGAATAAGTAACTAGCTAGTGACTCACGAGTGGATTATATTCCTTTTTGCTCTGTGTCAATGCCACAATGAGGGTCTTCTTTTACTTTATCCTCCTCTCAGTCCTATAAAGCTGCCAATGCTATTTGTTCCTTGTTGAGTCCTGCAAGATATCTCTCGAGCCTACCTAGTCAAAATTCTCTTTCCCTTTAATCATGATGCACTTGTGTTTATTTCAACTCTAGTATAGTCTATACTACGTTGAACCGGGATTATACTAATTTATTGATATATACATTATTTATAGTTACTTTCTTAGTTCTAGGTGTTTAGGCAATACTGGATTCAAGAGATGGGTGGCCGTGAAAATGCATTGGGGCTTCAAAGTGTTTCAGAAACGACAGTAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGAGTCGTGGCTAACCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTCCATTGAGTCAAACTTTGGGAGGCTCTCTTATGGTTTCTCATAGTGAGTTTGCCAATTCAGCTTACCCTTCTGTTTTGGAAAACCAGGGAATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATGATATAGCTAACACAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATGGAAAGGAGTCCAATAAACAATGAGCAATCTAAGCTCGAAGGTTCAACTTCTGAAGAAGGAGCTGCACCTGATGAACACAAAAGAAAGCGTGGACTTGACTATAATTTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAGCACTTAAAGATTCTTCTGGGAAGAGCTGTGATGATGATGTGAAAGAACAATGTGAAAAGAAGCCTAGAGTTGCACAAAATAGTACTGCTAACTTATGTGGAAAGCAATTGCTGAAGCAAAAGAAAGATGACTCCGAGAGTGAAGAAGGTTCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTACTTCAAGAACTTGTTCCAGGATGCGATAAGAAAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTCACACATTGGACATGGACCTATTGGTGGATATGGTGCCAGCATCAGCATGCCTAACCCATCAACACAATTCCCTCCAATGCCACAGTCTGTTTTGAACCAAAGCTTTTATGAAACAAGTTACAATACCATTACAGCTCTTGACAATTTGGGAACCAGTGGATGGTTGAAAACAGAGTTATAGAGTGTGAGATATCTGGTCTTGTTTCTTTTATCAGACTTTGGAATTTTATTGTCCAGTTGACTGCACAAATTAACTGAAGTTGAAGGCAGAGTAACTAAAAGTAGTCAGTCGTGGTATAGGACTATAGGGTGTTAATACCTAACTGTTTGTTCTTTGATTTTTTAGCAGAAGATGATTGTTCGCAAATAGTGTTTCATATTGGAAAGTGAGGGTAATTCTGTACCTAACATGTGGGGTACTTTATGCAATGATATTTGGTTATCCTTCAATCTGCATATATGAGTAAAAATGTTGCAAAATGTATCAAGATGAGATATTGTTGAGTGACATCAGTGTTCTATATATATGAATGATCTCATATTACTCTTGAATACTATCAGGCCTTGCTCGAGAGTCTCTTGTGTGTTCTAGGAATGAGATTCTTTGTATTCATGGAGTATATGTTG

>Glyma04g05091.3   sequence type=transcript   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGATCTTTGCTATTCATGAAGACAATTCAGGTATATTAGGAACGCATTCTGTGACTAGGGTGATGGAAAAACTACTTTTAATTACTTCAATGAAACTTAGTTCAAAATTCAAAATTATGTTTTTAACACACATCCAAACATTTTGGTCAATGCAAAAATCATGTTTGACCCTCAAGTTCGGAGCTTCAAAAGCACATCCATACACACTCTTAGTAGTAGAATTTGATGCCTTTGGTCATTTCTCAGAATGCACAGGTAGAGTTCTTCGCTCTTGTCCTGTCTTTTAAATCAAAACTAAGCTACAATGCTTGATGTTTAATCACTTGGTATGAAGCTTCAAACCTTCTAAGCCATTCAATGGGTCCTGCCCCGATTGTTGTTTGAATCCAATGGAGGAATGGGAATTTTATTAGTTGTTTTGTGAACAAAGTAGAAAAGGGAATCTGCTTTATTTGTAGTTTTGTTTAGCTATCAGTCTATCACGTTGCTTGTCTATGTCCACTTTATGCTCTGGAAGGTTCACTTTCCGTCTGAGGGGAAGCCTTTTTCCCTTTTTTTCCTGAACATCATAGGAATAGGCCTGATCCTACGATCTTTAAAGGAAGAATAAGTAACTAGCTAGTGACTCACGAGTGGATTATATTCCTTTTTGCTCTGTGTCAATGCCACAATGAGGGTCTTCTTTTACTTTATCCTCCTCTCAGTCCTATAAAGCTGCCAATGCTATTTGTTCCTTGTTGAGTCCTGCAAGATATCTCTCGAGCCTACCTAGTCAAAATTCTCTTTCCCTTTAATCATGATGCACTTGTGTTTATTTCAACTCTAGTATAGTCTATACTACGTTGAACCGGGATTATACTAATTTATTGATATATACATTATTTATAGTTACTTTCTTAGTTCTAGGTGTTTAGGCAATACTGGATTCAAGAGATGGGTGGCCGTGAAAATGCATTGGGGCTTCAAAGTGTTTCAGAAACGACAGTAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGAGTCGTGGCTAACCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTCCATTGAGTCAAACTTTGGGAGGCTCTCTTATGGTTTCTCATAGTGAGTTTGCCAATTCAGCTTACCCTTCTGTTTTGGAAAACCAGGGAATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATGATATAGCTAACACAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATGGAAAGGAGTCCAATAAACAATGAGCAATCTAAGCTCGAAGGTTCAACTTCTGAAGAAGGAGCTGCACCTGATGAACACAAAAGAAAGCGTGGACTTGACTATAATTTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAGCACTTAAAGATTCTTCTGGGAAGAGCTGTGATGATGATGTGAAAGAACAATGTGAAAAGAAGCCTAGAGTTGCACAAAATAGTACTGCTAACTTATGTGGAAAGCAATTGCTGAAGCAAAAGAAAGATGACTCCGAGAGTGAAGAAGGTTCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTACTTCAAGAACTTGTTCCAGGATGCGATAAGAAAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTAAATCCACAATTGAATTTTAATGTAGAGCAGATCTGTTCCAAAGATTCACACATTGGACATGGACCTATTGGTGGATATGGTGCCAGCATCAGCATGCCTAACCCATCAACACAATTCCCTCCAATGCCACAGGATGGTTGAAAACAGAGTTATAGAGTGTGAGATATCTGGTCTTGTTTCTTTTATCAGACTTTGGAATTTTATTGTCCAGTTGACTGCACAAATTAACTGAAGTTGAAGGCAGAGTAACTAAAAGTAGTCAGTCGTGGTATAGGACTATAGGGTGTTAATACCTAACTGTTTGTTCTTTGATTTTTTAGCAGAAGATGATTGTTCGCAAATAGTGTTTCATATTGGAAAGTGAGGGTAATTCTGTACCTAACATGTGGGGTACTTTATGCAATGATATTTGGTTATCCTTCAATCTGCATATATGAGTAAAAATGTTGCAAAATGTATCAAGATGAGATATTGTTGAGTGACATCAGTGTTCTATATATATGAATGATCTCATATTACTCTTGAATACTATCAGGCCTTGCTCGAGAGTCTCTTGTGTGTTCTAGGAATGAGATTCTTTGTATTCATGGAGTATATGTTG

Coding sequences of Glyma04g05091

Limit To All Plant Sequences

>Glyma04g05091.1   sequence type=CDS   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGCCGTGAAAATGCATTGGGGCTTCAAAGTGTTTCAGAAACGACAGTAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGAGTCGTGGCTAACCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTCCATTGAGTCAAACTTTGGGAGGCTCTCTTATGGTTTCTCATAGTGAGTTTGCCAATTCAGCTTACCCTTCTGTTTTGGAAAACCAGGGAATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATGATATAGCTAACACAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATGGAAAGGAGTCCAATAAACAATGAGCAATCTAAGCTCGAAGGTTCAACTTCTGAAGAAGGAGCTGCACCTGATGAACACAAAAGAAAGCGTGGACTTGACTATAATTTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAGCACTTAAAGATTCTTCTGGGAAGAGCTGTGATGATGATGTGAAAGAACAATGTGAAAAGAAGCCTAGAGTTGCACAAAATAGTACTGCTAACTTATGTGGAAAGCAATTGCTGAAGCAAAAGAAAGATGACTCCGAGAGTGAAGAAGGTTCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTACTTCAAGAACTTGTTCCAGGATGCGATAAGAAAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTAAATCCACAATTGAATTTTAATGTAGAGCAGATCTGTTCCAAAGATTCACACATTGGACATGGACCTATTGGTGGATATGGTGCCAGCATCAGCATGCCTAACCCATCAACACAATTCCCTCCAATGCCACAGTCTGTTTTGAACCAAAGCTTTTATGAAACAAGTTACAATACCATTACAGCTCTTGACAATTTGGGAACCAGTGGATGGTTGAAAACAGAGTTATAG

>Glyma04g05091.2   sequence type=CDS   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGCCGTGAAAATGCATTGGGGCTTCAAAGTGTTTCAGAAACGACAGTAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGAGTCGTGGCTAACCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTCCATTGAGTCAAACTTTGGGAGGCTCTCTTATGGTTTCTCATAGTGAGTTTGCCAATTCAGCTTACCCTTCTGTTTTGGAAAACCAGGGAATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATGATATAGCTAACACAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATGGAAAGGAGTCCAATAAACAATGAGCAATCTAAGCTCGAAGGTTCAACTTCTGAAGAAGGAGCTGCACCTGATGAACACAAAAGAAAGCGTGGACTTGACTATAATTTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAGCACTTAAAGATTCTTCTGGGAAGAGCTGTGATGATGATGTGAAAGAACAATGTGAAAAGAAGCCTAGAGTTGCACAAAATAGTACTGCTAACTTATGTGGAAAGCAATTGCTGAAGCAAAAGAAAGATGACTCCGAGAGTGAAGAAGGTTCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTACTTCAAGAACTTGTTCCAGGATGCGATAAGAAAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTCACACATTGGACATGGACCTATTGGTGGATATGGTGCCAGCATCAGCATGCCTAACCCATCAACACAATTCCCTCCAATGCCACAGTCTGTTTTGAACCAAAGCTTTTATGAAACAAGTTACAATACCATTACAGCTCTTGACAATTTGGGAACCAGTGGATGGTTGAAAACAGAGTTATAG

>Glyma04g05091.3   sequence type=CDS   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGCCGTGAAAATGCATTGGGGCTTCAAAGTGTTTCAGAAACGACAGTAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGAGTCGTGGCTAACCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTCCATTGAGTCAAACTTTGGGAGGCTCTCTTATGGTTTCTCATAGTGAGTTTGCCAATTCAGCTTACCCTTCTGTTTTGGAAAACCAGGGAATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATGATATAGCTAACACAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATGGAAAGGAGTCCAATAAACAATGAGCAATCTAAGCTCGAAGGTTCAACTTCTGAAGAAGGAGCTGCACCTGATGAACACAAAAGAAAGCGTGGACTTGACTATAATTTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAGCACTTAAAGATTCTTCTGGGAAGAGCTGTGATGATGATGTGAAAGAACAATGTGAAAAGAAGCCTAGAGTTGCACAAAATAGTACTGCTAACTTATGTGGAAAGCAATTGCTGAAGCAAAAGAAAGATGACTCCGAGAGTGAAGAAGGTTCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTACTTCAAGAACTTGTTCCAGGATGCGATAAGAAAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTAAATCCACAATTGAATTTTAATGTAGAGCAGATCTGTTCCAAAGATTCACACATTGGACATGGACCTATTGGTGGATATGGTGCCAGCATCAGCATGCCTAACCCATCAACACAATTCCCTCCAATGCCACAGGATGGTTGA

Predicted protein sequences of Glyma04g05091

Limit To All Plant Sequences

>Glyma04g05091.1   sequence type=predicted peptide   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGRENALGLQSVSETTVISSVSMAMPSGVVANPFLASSAWDPLVPLSQTLGGSLMVSHSEFANSAYPSVLENQGMNCDSHFVQYVSDSNFEHMALKVPSFGQTGSYDIANTGYLPNHNPSNESGMERSPINNEQSKLEGSTSEEGAAPDEHKRKRGLDYNFTFSSNKNAEGEALKDSSGKSCDDDVKEQCEKKPRVAQNSTANLCGKQLLKQKKDDSESEEGSKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKKTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPQLNFNVEQICSKDSHIGHGPIGGYGASISMPNPSTQFPPMPQSVLNQSFYETSYNTITALDNLGTSGWLKTEL*

>Glyma04g05091.2   sequence type=predicted peptide   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGRENALGLQSVSETTVISSVSMAMPSGVVANPFLASSAWDPLVPLSQTLGGSLMVSHSEFANSAYPSVLENQGMNCDSHFVQYVSDSNFEHMALKVPSFGQTGSYDIANTGYLPNHNPSNESGMERSPINNEQSKLEGSTSEEGAAPDEHKRKRGLDYNFTFSSNKNAEGEALKDSSGKSCDDDVKEQCEKKPRVAQNSTANLCGKQLLKQKKDDSESEEGSKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKKTGKAVMLDEIINYVQSLQQQVESHIGHGPIGGYGASISMPNPSTQFPPMPQSVLNQSFYETSYNTITALDNLGTSGWLKTEL*

>Glyma04g05091.3   sequence type=predicted peptide   gene model=Glyma04g05091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGRENALGLQSVSETTVISSVSMAMPSGVVANPFLASSAWDPLVPLSQTLGGSLMVSHSEFANSAYPSVLENQGMNCDSHFVQYVSDSNFEHMALKVPSFGQTGSYDIANTGYLPNHNPSNESGMERSPINNEQSKLEGSTSEEGAAPDEHKRKRGLDYNFTFSSNKNAEGEALKDSSGKSCDDDVKEQCEKKPRVAQNSTANLCGKQLLKQKKDDSESEEGSKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKKTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPQLNFNVEQICSKDSHIGHGPIGGYGASISMPNPSTQFPPMPQDG*

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