Glyma04g05070 - SoyBase

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Report for Sequence Feature Glyma04g05070

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3798758
stop:	3801560
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58470	AT	Annotation by Michelle Graham. TAIR10: RNA-binding protein 1 \| chr1:21727374-21728539 FORWARD LENGTH=360	SoyBase	E_val: 8.00E-63	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003727	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded RNA binding	SoyBase	N/A	ISS
KOG4205	KOG	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF14	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9R6V8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DAZ-associated protein, putative n=1 Tax=Ricinus communis RepID=B9R6V8_RICCO	SoyBase	E_val: 2.00E-79	ISS
UniRef100_I1JTT1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTT1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05070

Paralog	Evidence	Comments
Glyma06g05150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g047800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05070

Limit To All Plant Sequences

>Glyma04g05070.1   sequence type=CDS   gene model=Glyma04g05070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTCAAGATGGATTCCGATAGCGCGAAGCTGTTCGTAGGAGGCATTTCTCGCGACACTACCGAACACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTCGGACTCCACAATCTCCGTAGACCGCACCACCCGAAGCCCTAGAGGTTTTGGCTTCGTCACCTTCTCCGACCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGTAGAAGTGAAAAAAGCAATTCCCAGGAGTGAACAACATCAACACCAAAACCCATTACAGAGTAGAGGGGGTGGTTATTATTATAATAATAATAATAATAATAATGATGATAATAATAATAATAGTAATGACTATTGCAGTGACCACAACGTTAGGACTAAAAAGATATTTGTAGGGGGTTTACCTGCTGGTATATCCGAGGAGGAGTTTAAGAACTACTTTGAGAGGTTCGGTCGGATAACCGATGTCGTGGTGATGCAGGACAGTGTAACTCACCGGCCAAGGGGGTTTGGGTTCATCACTTTCGAGTCCGAGGAATCGGTTCAAAACGTTATGGTGAAGAGTTTTCATGACTTGAACGGTAGACAGGTGGAGGTGAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGCTATGATGGGTTTAGTAAATTAAGAAATAAGAGTGAAAGAGGAGTTCCTAAGAGTTTTCCTCCTTTTAGTCATAGGGATATGCTCCCGCTCCCAGGTTTCACACCTTTGCCGTGGTATAGTGGTGATGGAGTATATGCATATGGGTCTAATGCGTATGGTTGCTGGTACCCTGTGGGTGGTTATGGGGGGAATGGATACGCAGTTCCTTCTGATGCTCCTAGTAACCTCTGGTATGGGCCAATGATGACTGGTCCTCAGGCATGTCAGGTGCCTTACGCTAGTGCTGTTCCAAATGTTGTGTATGTGGGGGGTAGGATTGGAATAGTAGGTAGTGGTGCTGGATCTTGGGGGTACACTGGCATTATGGGATCTGCAACAAATTTTAAATTTGATCAAGCTTTTAATGCCAATGAATTTGTTCCTGGCAATGTGACATCACCTCATGGTGTAAAGCAGGATGTTATTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGGAATTTCTAGTTGA

Predicted protein sequences of Glyma04g05070

Limit To All Plant Sequences

>Glyma04g05070.1   sequence type=predicted peptide   gene model=Glyma04g05070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFKMDSDSAKLFVGGISRDTTEHVLKLHFAKYGVVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNPLQSRGGGYYYNNNNNNNDDNNNNSNDYCSDHNVRTKKIFVGGLPAGISEEEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFESEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRNKSERGVPKSFPPFSHRDMLPLPGFTPLPWYSGDGVYAYGSNAYGCWYPVGGYGGNGYAVPSDAPSNLWYGPMMTGPQACQVPYASAVPNVVYVGGRIGIVGSGAGSWGYTGIMGSATNFKFDQAFNANEFVPGNVTSPHGVKQDVIDSSSLKGSNGGISS*

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