Glyma04g05030 - SoyBase

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Report for Sequence Feature Glyma04g05030

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3769117
stop:	3770343
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49760	AT	Annotation by Michelle Graham. TAIR10: basic leucine-zipper 5 \| chr3:18455569-18456039 REVERSE LENGTH=156	SoyBase	E_val: 2.00E-15	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF60	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07716	PFAM	Basic region leucine zipper	JGI		ISS
UniRef100_B9R6W5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6W5_RICCO	SoyBase	E_val: 8.00E-29	ISS
UniRef100_I1JTS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTS9_SOYBN	SoyBase	E_val: 9.00E-75	ISS

Expression Patterns of Glyma04g05030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05030

Paralog	Evidence	Comments
Glyma06g05111	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g05030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05030

Limit To All Plant Sequences

>Glyma04g05030.2   sequence type=CDS   gene model=Glyma04g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTCCACGAAGACGAAGCGGTTCAGCTCCCGTGTACTCCGGTTCACGAAACCATGCTGACCGAAAGCGAACTCGAAGACCTCTTTTCTCTCATAAACCAATCGAGAGACCAGCCCAGCCCGGGGTCCGGTTCGCAAGGGTCAAACCGGGCGGTTTACTCGCCAGAGGAACGAAAGTTGAGACGCATGAAATCGAACCGGGAATCGGCCCGAAGGTCCCGCTACAGAAAGAAGCAGCATATGGAGAATCTAACGAGCCAACTGAACCAGTTGAGAATCCAAAATCGGTTAATCAAAAACCAACTAGCCTCCACCATGCACCAGCACCTCCTACTATCCCTACATAACGACCATCTTAAATCCGAATCCGTTGCCCTCATGGCCACACTTTCGGATCTATGTGGGATTTTAGGCACCATGCTTGCACATTATTAA

Predicted protein sequences of Glyma04g05030

Limit To All Plant Sequences

>Glyma04g05030.2   sequence type=predicted peptide   gene model=Glyma04g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFHEDEAVQLPCTPVHETMLTESELEDLFSLINQSRDQPSPGSGSQGSNRAVYSPEERKLRRMKSNRESARRSRYRKKQHMENLTSQLNQLRIQNRLIKNQLASTMHQHLLLSLHNDHLKSESVALMATLSDLCGILGTMLAHY*

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