Glyma04g05020 - SoyBase

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Report for Sequence Feature Glyma04g05020

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3758796
stop:	3765417
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g05020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59520	AT	Annotation by Michelle Graham. TAIR10: CW7 \| chr1:21861589-21866016 FORWARD LENGTH=388	SoyBase	E_val: 2.00E-174	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2465	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21477	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21477:SF3	Panther	gb def: CW7 protein (At1g59520)	JGI		ISS
PF09741	PFAM	Uncharacterized conserved protein (DUF2045)	JGI		ISS
UniRef100_B9R6W6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cw7 protein, putative n=1 Tax=Ricinus communis RepID=B9R6W6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339525	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339525 related cluster n=1 Tax=unknown RepID=UPI0002339525	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g05020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g05020

Paralog	Evidence	Comments
Glyma06g05100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g05020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g047500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g05020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g05020

Limit To All Plant Sequences

>Glyma04g05020.1   sequence type=CDS   gene model=Glyma04g05020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGTGATGGAGGCGAAATCCCCTCAAGGTATGAATTGTTGAGCATGGTGAAGAAGCATTCCAATTTAATAGGGAAAACGGTAGTTGAGGAGCAACATGCTTCTGATATCGAAATGGATATGAGGTTTTGGCACGATGTCTTTGATTTGTATTTTGTCTGTGGCAAGGAGTCAAGGGGACGCCAAGATGATGATCTTGTTTTCTTTGTCAGAAAATTGGGTTCCCATGGTTCTGGTTCCAACAATAAAACAGAGAGCGTTGATCCTTATTTTGTACGCAGGTGGGCACCTAAGTTGAGCAACTTAGTTGATGAAACTTCTATAGATGTGAACTGGAGGCGTTCATTTTACTTGAATCTAATTGCTCATACATCATTCAGTGTAACTGTTGCAATTTGCAGTCACCAGGATCTTCTGAACCATCGAGCTGGGCAGGATACACCTGCTGGGCAGGATACACCTTTATCCCCTATATATAAGGTTGTGAAGACTGTTTATGCATCCCCAAGTCGTGTAAATTTTCAATTGGACTCTGAAAAGGCAATGGAAACGACTCCTGCTTATCCAGATATATGTTTCGCAATTGATGATTTTGACTCCACTTTTGATGCTGTGGTTTTGACTGAAAAAGATCATTGCTATTGTGTAGTTCTTAACGCACATGATGGGGCAGCATTTCCGAGTGAAAAGGTGGCCAATGATTGTAGTACTAGTGATAGCTCCTCTTTGCCAGTCCATTCTAGTTCTGCAAAGAAAAGGAATACAAAGCTTACACTTTTATCAGGATTTGTCAGCTATCAGATGGTCCGAGATGCTTATGATGCTGGTAGGTCTCGATTTGGGAGCCTTTTATCCGTGGGCCATTCTTCAGGCAAAACAGACAGGATTTACATGAAAGGTCCTGGTGGCCGAGGGGAAGTTGAAGTAGCTGTTTCTGGTGTTGCGGATCAAAGCCAGCAGGATTCAGGCCCATTTTCGCCAGTTATATCAAAGAAAGGGTTTGGGCTTGGCGTCATTGTCCACAAAGCAGCATCTGCTGCATCAGTAGCAGCAAGGCATGCTTATGCAGCTGCCTCTGCCTCCAGCCCAAATTTTGATGAGTTGATACCTTTGAAATGCAGCTTAATGTCCATATCATTGCCCTGGGAATTTATTGCGTATGATCTTCTGTTTAAGGGAGCTCCTCCAGTGAACATGTGA

Predicted protein sequences of Glyma04g05020

Limit To All Plant Sequences

>Glyma04g05020.1   sequence type=predicted peptide   gene model=Glyma04g05020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGDGGEIPSRYELLSMVKKHSNLIGKTVVEEQHASDIEMDMRFWHDVFDLYFVCGKESRGRQDDDLVFFVRKLGSHGSGSNNKTESVDPYFVRRWAPKLSNLVDETSIDVNWRRSFYLNLIAHTSFSVTVAICSHQDLLNHRAGQDTPAGQDTPLSPIYKVVKTVYASPSRVNFQLDSEKAMETTPAYPDICFAIDDFDSTFDAVVLTEKDHCYCVVLNAHDGAAFPSEKVANDCSTSDSSSLPVHSSSAKKRNTKLTLLSGFVSYQMVRDAYDAGRSRFGSLLSVGHSSGKTDRIYMKGPGGRGEVEVAVSGVADQSQQDSGPFSPVISKKGFGLGVIVHKAASAASVAARHAYAAASASSPNFDELIPLKCSLMSISLPWEFIAYDLLFKGAPPVNM*

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