Glyma04g04990 - SoyBase

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Report for Sequence Feature Glyma04g04990

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3734573
stop:	3738641
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10720	AT	Annotation by Michelle Graham. TAIR10: BSD domain-containing protein \| chr1:3562964-3564446 FORWARD LENGTH=429	SoyBase	E_val: 6.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03909	PFAM	BSD domain	JGI		ISS
UniRef100_Q9SGX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F20B24.15 n=1 Tax=Arabidopsis thaliana RepID=Q9SGX8_ARATH	SoyBase	E_val: 9.00E-65	ISS
UniRef100_UPI0002339521	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339521 related cluster n=1 Tax=unknown RepID=UPI0002339521	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04990

Paralog	Evidence	Comments
Glyma06g05060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g047200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04990

Limit To All Plant Sequences

>Glyma04g04990.1   sequence type=CDS   gene model=Glyma04g04990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATGGCTGGCTCGTTCCTTCGCAAACTCTCTCCGACTCGATGGCGACGTAGACGACGAAAACGACATCGTACTGGATCCACCTACCACCTCATCGAGAGACCCCGCGCAACAGCAACACGAGGCACGAGAAAATGCATTCGGATCAGAAGCTGAAGAAGACGAAGAAACGCAAGATCGTGCTGGAGTCAAAGAGGACCTCGACGAAATCAAGCAAACCCTAACTCGTCAATTTTGGGGAATGGCCTCCTTCCTCGCTCCACCGCCATCTGATTCTCATTCTCATTCTCAATCCGATCCCTCTTCGTTCGTTTCCGATCAATCCAATCATCGCGCTGTTTCTCCGAACGAAGAACTGCAATTGGATGAGGCTGCGATTTCCAATCACTCTAATTCGGTTTCGGTGGGATCCGATTCGGAAGGGGATTTTGGTCTCGAGCAACGCGCGGTTGGAATTACCGAAGAGGTGCTGGTCTTCGCGATGAACATTGCTATGCATCCCGAGACGTGGTTGGATTTTCCTATTGATGAGGAAGATGACACCGACGATTTTGACATGTCTGATGCACAACAAGAGCATGCTGCGGTTGTTGAAAGATTGACTCCTAGATTAGCTGCGCTCAGAATTGAACTGTGCCCTTGTCATATGAGTGAAAGTTACTTCTGGAAAGTGTATTTTGTTCTTTTGCATTCAAGGCTCAATAAGGAAGACGCAGGGATTTTGTCTACACCCCAGGTCATGGCAGCAAGAGCAATGTGGATGCAGGAATTGCATAAACAAACAAAGCCTGAATTTGAAATTTTTGGAAGAAGTGCTTCCTACTCAAGAGACAAGGCACAGCACGATGATTTTACTCCCAACTTATTGGATGATGCTTATTCTGATGACACGCCTAATCAGACATATGGATATAGAACAACCTCTTTGTCCATGATGTCAGATTGTGAGACTGATAAGCACATGGTTGAAAGTTCTGGAATGCATTTCACCGATAAGTCTGTTATTGAGGAAAATTCAATTATTAAAACTGAAAACAAGGATCTAAAATGTGGTCGACCCTCTCAAATTATTATTCAGGATTATGATGATGATGATGAATGGCCAGAGGAAGATTCTGATATAGGGGGATATGGTGGAACAACTCATCCCATGGTGAATGAAGATGACATATCTTTCAGTGATCTTGAGGATGATGATTATGGCATTAAACCCGTTAGTTCCAGTACAGGTTCAAAGGTGATATGA

Predicted protein sequences of Glyma04g04990

Limit To All Plant Sequences

>Glyma04g04990.1   sequence type=predicted peptide   gene model=Glyma04g04990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWLARSFANSLRLDGDVDDENDIVLDPPTTSSRDPAQQQHEARENAFGSEAEEDEETQDRAGVKEDLDEIKQTLTRQFWGMASFLAPPPSDSHSHSQSDPSSFVSDQSNHRAVSPNEELQLDEAAISNHSNSVSVGSDSEGDFGLEQRAVGITEEVLVFAMNIAMHPETWLDFPIDEEDDTDDFDMSDAQQEHAAVVERLTPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKEDAGILSTPQVMAARAMWMQELHKQTKPEFEIFGRSASYSRDKAQHDDFTPNLLDDAYSDDTPNQTYGYRTTSLSMMSDCETDKHMVESSGMHFTDKSVIEENSIIKTENKDLKCGRPSQIIIQDYDDDDEWPEEDSDIGGYGGTTHPMVNEDDISFSDLEDDDYGIKPVSSSTGSKVI*

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