Glyma04g04980 - SoyBase

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Report for Sequence Feature Glyma04g04980

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3726039
stop:	3727829
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49810	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr3:18474936-18476282 REVERSE LENGTH=448	SoyBase	E_val: 6.00E-177	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR22849	Panther	WDSAM1 PROTEIN	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_G7IBA8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IBA8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTS4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04980

Paralog	Evidence	Comments
Glyma06g05050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g047100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04980

Limit To All Plant Sequences

>Glyma04g04980.1   sequence type=CDS   gene model=Glyma04g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTTTACCAACCACCCAAAGAAGAGGTAGAAAGAACCATGAAGGGCAACAACGTTTTGGATCTGAAAACGTTAATTGATGAGCTTGAGTCATCATCAATTGAAGTCCCTTCGGTTTTTATCTGCCCTATTTCACTTGAGCCAATGCTAGACCCGGTGACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAGATGGTTCTCCCTCGGTCACAACACGTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCGGTCACACCAAACACCACACTCCACCACTTCATACTCTCTTGGTTCTCTCACAAGTACTTGGTCATGAAGAAGAAGCTCGAGGACGTTCAAGGCACGGCCTTGGAGCTCTTGGACACGTTAAAGAAGGTAAAGGGTCAAAATAGAGTTCGAGCTCTCAAACAACTTCGCCAACTCGTTGATTCCCACGTGTCCACGAGGAAAACCGTTGAGGAAAATAATGGTTCTTCTTTGATTTCTTCCTTGCTGGGTCCTTTCACTTCCCACGCTGTTGGTTCGGAAGCAATTGGGATTCTCGTGAATTTGGAGTTGGGTTCGGAGTTGAAGAGGAGTCTCATGGACCCCGCGAAGGTGTCGTTGTTGGTGGACATCATGAACGAGGGAACAATTCAGACAAAGATGAATTGTGCCAAATTGATTCAAACGTTGTTGGTAGAAGGTGACCCCTCCGAGACAGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTGTTGAGGTTAGTGAGAGATAAGAAACACCCCACTAGTGTTGTAACCGGACTCATATTACTCAAAATTGTATCTTCGCGTGAATCCGTTAGAGGCTCAATTATAAGCATAGGAGCGGTGCCTCAATTGATTCAGCTTTTACCCACTTTGAATAATGAGTGTTTGGAGATAGCACTTCATATTCTTGAGGTTTTGTCAACACTTCCTGAAGGGAGAATGGCTTTGAAAGAGTGTCCAAATATTATTCCCAATGTGGTCAAGTTGTTGATGAGAGTTTCAGAGAGTTGCACACAATTTGCATTGTCGATATTGTGGGCTATTTACAAGCTTGCCCCAGAGGAATGTGCTTCGAAAGCTGTGGAGGCAGGGTTGGCGGCGAAGCTACTGCTAGTAATTCAGAGTGGTTGCAACCCGGTGTTAAAGCAGAAATCTACCGAGTTTTTGAAAATGTGCAGCCTAGATTACTCTACTAGTATTTTGATTTCCAAGTGTATGCTTACTGCAACAATACAATGA

Predicted protein sequences of Glyma04g04980

Limit To All Plant Sequences

>Glyma04g04980.1   sequence type=predicted peptide   gene model=Glyma04g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLYQPPKEEVERTMKGNNVLDLKTLIDELESSSIEVPSVFICPISLEPMLDPVTLCTGQTYDRSNILRWFSLGHNTCPTTMQELWDDSVTPNTTLHHFILSWFSHKYLVMKKKLEDVQGTALELLDTLKKVKGQNRVRALKQLRQLVDSHVSTRKTVEENNGSSLISSLLGPFTSHAVGSEAIGILVNLELGSELKRSLMDPAKVSLLVDIMNEGTIQTKMNCAKLIQTLLVEGDPSETVVLSSLSLLVGVLRLVRDKKHPTSVVTGLILLKIVSSRESVRGSIISIGAVPQLIQLLPTLNNECLEIALHILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSTEFLKMCSLDYSTSILISKCMLTATIQ*

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