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Report for Sequence Feature Glyma04g04961

Feature Type:gene_model
Chromosome:Gm04
Start:3718771
stop:3720851
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04961
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27480AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:9544607-9546168 FORWARD LENGTH=432 SoyBaseE_val: 2.00E-59ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0004607GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine-sterol O-acyltransferase activity SoyBaseN/AISS
GO:0008374GO-mf Annotation by Michelle Graham. GO Molecular Function: O-acyltransferase activity SoyBaseN/AISS
PTHR11440Panther LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED JGI ISS
PTHR11440:SF12Panther PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE-RELATED JGI ISS
PF02450PFAM Lecithin:cholesterol acyltransferase JGI ISS
UniRef100_I1JTS3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JTS3_SOYBN SoyBaseE_val: 8.00E-124ISS
UniRef100_Q71CE5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lecithine cholesterol acyltransferase-like protein n=1 Tax=Medicago truncatula RepID=Q71CE5_MEDTR SoyBaseE_val: 7.00E-84ISS

Expression Patterns of Glyma04g04961
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04961 not represented in the dataset
Glyma04g04961 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04961
ParalogEvidenceComments
Glyma06g05040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04961 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g04961
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g04961
>Glyma04g04961.2   sequence type=transcript   gene model=Glyma04g04961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACATCCGCCATTTATGGTTTCCTCTGCCATGATAATGCATCCATCCAGAGCACTAACATCTGACAGGGGTAGCGTAGGTATTTCATTCAATCTACTATCCATATTGTGATGAAGAAGGAACAGGGTCTCAAGATTGAGGTTGCTACATTCAGAGTCACAGTGGTTGCTGTGATGCTGTCATTGCTATGCACATGTGGGGCAAGCAACTTCGACCCTCTGATTCTAATACCTGGTAACGGAGGGAACCAACTAGAAGCAAGGTTGACCAATCAGTACAAGCCCTCTAGTTTCATCTGCGAATCAAGAAAAAGAAAGGATGGTTCAGACTTTGATTTGATTCCAGTGTCATACTTGCTCCTTTCACTCAATGCTTTGCTGAGCGCATGACCCTTCACTACCACCAAGAACTCGATGATTACTTCAACACTCCCGGGGTTCAGACCCGGATCCCTCACTTTGGTTCCACCAACTCCCTTCCTTATCTCAAGCATATCACCGGATACATGGCACCCCTGGTAGATTCATTACAAAAGCTTGGCTATGCTGATGGTGAGACACTGTTTGGCAGAATAGGCATATCACTTTTAGATATGGTCTAGCTGCTGAAGGCCACTCCTCACAAGTGGGTTCCAAGTTCCTTAAGGGCCTAAAGAATTTGATAGAAGAAGCAAGCAATTCCAATAATGGGAAGCCAGTGATACTTCTCTCCCACAGTTTAGGAGGCCTATTTGTCCTCCAACTTCTTAATAGAACCCCCCTCTTGGCGCAAAAAATTCATCAAACATTTCATTGCTCTTTCAGCTCCATGGGGTGGTGATATAGACGAAATGTACACCTTTGCATCTGGCAACACTCTAGGAGTGCCCCTAGTGGACCCTTTATTAGTGAGGGATGAACAAAGAAGCTCTGAGAGTAACCTATGGCTTTTGCCTAACCCCAAAGTATTTGGTCCTCAAAAACCAATAGTGATCACTCCAAATAAGACCTATTCAGCTCATGATATGGTCGATTTTCTCAAAGACATTGGTTTTCCTGAAGGGGTTTACCCTTATGAAACACGCATTGTACCCTTGATAGGGAACATTCAAGCACCACAAGTGCCTATAACTTGTATCATGGGGACGGGAGTGAGAACCTTAGAAACTTTGTTTTATGGGAAAGGTGATTTTGATGAACGTCCAGAAATTTCATATGGGGATGGTGATGGAACGGTGAACTTAGTGAGCTTGTTGGTGTTTCAATCACTATGGAAAGAGGAGAAAAATCAATATCTTAAAGTGGTTAAGATAGATGGTGTGCGCATACTTCAATACTTAAAGATGAGGTTGCACTAAATGAGATAGTAGGTGAGATTAGTCCAATTAATTCTCATGCTGAGCTTGGTTTAAGTAATTCTCATGCTGAGTTTTGGAAACAAGAAATCAAGCATAGCTAAAGAGTTGTTTTTGTGCTTTTCTTCTTAATTTGACAATATTCGTGTAATAAATAAAGAACCTTTAACCTACTAGTTGGCCCAATGGTAGATGGTTTGAGTAATTTGTATGAAGTTTTAAGTTTAAATATCATTACTGTCACTAAAAAAAATTAATCTCACAACTTTTAATT
Coding sequences of Glyma04g04961
>Glyma04g04961.1   sequence type=CDS   gene model=Glyma04g04961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCTTCACTACCACCAAGAACTCGATGATTACTTCAACACTCCCGGGGTTCAGACCCGGATCCCTCACTTTGGTTCCACCAACTCCCTTCCTTATCTCAAGCATATCACCGGATACATGGCACCCCTGGTAGATTCATTACAAAAGCTTGGCTATGCTGATGCTCCATGGGGTGGTGATATAGACGAAATGTACACCTTTGCATCTGGCAACACTCTAGGAGTGCCCCTAGTGGACCCTTTATTAGTGAGGGATGAACAAAGAAGCTCTGAGAGTAACCTATGGCTTTTGCCTAACCCCAAAGTATTTGGTCCTCAAAAACCAATAGTGATCACTCCAAATAAGACCTATTCAGCTCATGATATGGTCGATTTTCTCAAAGACATTGGTTTTCCTGAAGGGGTTTACCCTTATGAAACACGCATTGTACCCTTGATAGGGAACATTCAAGCACCACAAGTGCCTATAACTTGTATCATGGGGACGGGAGTGAGAACCTTAGAAACTTTGTTTTATGGGAAAGGTGATTTTGATGAACGTCCAGAAATTTCATATGGGGATGGTGATGGAACGGTGAACTTAGTGAGCTTGTTGGTGTTTCAATCACTATGGAAAGAGGAGAAAAATCAATATCTTAAAGTGGTTAAGATAGATGGTGTGCGCATACTTCAATACTTAAAGATGAGGTTGCACTAA

>Glyma04g04961.2   sequence type=CDS   gene model=Glyma04g04961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACCTTTGCATCTGGCAACACTCTAGGAGTGCCCCTAGTGGACCCTTTATTAGTGAGGGATGAACAAAGAAGCTCTGAGAGTAACCTATGGCTTTTGCCTAACCCCAAAGTATTTGGTCCTCAAAAACCAATAGTGATCACTCCAAATAAGACCTATTCAGCTCATGATATGGTCGATTTTCTCAAAGACATTGGTTTTCCTGAAGGGGTTTACCCTTATGAAACACGCATTGTACCCTTGATAGGGAACATTCAAGCACCACAAGTGCCTATAACTTGTATCATGGGGACGGGAGTGAGAACCTTAGAAACTTTGTTTTATGGGAAAGGTGATTTTGATGAACGTCCAGAAATTTCATATGGGGATGGTGATGGAACGGTGAACTTAGTGAGCTTGTTGGTGTTTCAATCACTATGGAAAGAGGAGAAAAATCAATATCTTAAAGTGGTTAAGATAGATGGTGTGCGCATACTTCAATACTTAAAGATGAGGTTGCACTAA
Predicted protein sequences of Glyma04g04961
>Glyma04g04961.1   sequence type=predicted peptide   gene model=Glyma04g04961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLHYHQELDDYFNTPGVQTRIPHFGSTNSLPYLKHITGYMAPLVDSLQKLGYADAPWGGDIDEMYTFASGNTLGVPLVDPLLVRDEQRSSESNLWLLPNPKVFGPQKPIVITPNKTYSAHDMVDFLKDIGFPEGVYPYETRIVPLIGNIQAPQVPITCIMGTGVRTLETLFYGKGDFDERPEISYGDGDGTVNLVSLLVFQSLWKEEKNQYLKVVKIDGVRILQYLKMRLH*

>Glyma04g04961.2   sequence type=predicted peptide   gene model=Glyma04g04961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTFASGNTLGVPLVDPLLVRDEQRSSESNLWLLPNPKVFGPQKPIVITPNKTYSAHDMVDFLKDIGFPEGVYPYETRIVPLIGNIQAPQVPITCIMGTGVRTLETLFYGKGDFDERPEISYGDGDGTVNLVSLLVFQSLWKEEKNQYLKVVKIDGVRILQYLKMRLH*






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