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Report for Sequence Feature Glyma04g04931

Feature Type:gene_model
Chromosome:Gm04
Start:3696265
stop:3698374
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04931
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G33540AT Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 18 | chr1:12162349-12164700 REVERSE LENGTH=446 SoyBaseE_val: 4.00E-37ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI ISS
PTHR11802:SF7Panther SERINE CARBOXYPEPTIDASE I (PLANTS) JGI ISS
PF00450PFAM Serine carboxypeptidase JGI ISS
UniRef100_G7J548UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7J548_MEDTR SoyBaseE_val: 2.00E-60ISS
UniRef100_I1JTS0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTS0_SOYBN SoyBaseE_val: 3.00E-99ISS

Expression Patterns of Glyma04g04931
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04931 not represented in the dataset
Glyma04g04931 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04931
ParalogEvidenceComments
Glyma06g05020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04931 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g04931
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g04931
>Glyma04g04931.1   sequence type=CDS   gene model=Glyma04g04931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGATCCTAGAAGGGACCCTCTCCTGCTTTGGCTAACCGGGGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGTCTTTGAAATAGGAGTTGCATGTCCACTGACATTTAAAAATGAGGAATACAACGGGAGCTTACCTAATTTGACCTTGAAGCCACAATCATGGACAAAGGTAAGTAGCATTATATTTTTGGATCTGCCTGTGCGATTACTGGCTTTTCTTATCTCAAAACAAAACGTGCTTGTTCCCAATGCTCATCAATTTATTAGGAAGTGGCTAATTGATCGTCCGGAATTTCTCTCAAATGAAGTGTACATTGCTGGTGACTCATACTGCCGCATTCCTGTCCTAGTTATTGTTAAAGAAATTTCAATTCAAACGGTATCACACTCACAAAAGGGAAACGAAGGTGGTATCCAACCATGGATAAATATCCAGGTTTGTGCATTTATTAACGAAGCAGGTTTTTGA
Predicted protein sequences of Glyma04g04931
>Glyma04g04931.1   sequence type=predicted peptide   gene model=Glyma04g04931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NDPRRDPLLLWLTGGPGCSAFSGLVFEIGVACPLTFKNEEYNGSLPNLTLKPQSWTKVSSIIFLDLPVRLLAFLISKQNVLVPNAHQFIRKWLIDRPEFLSNEVYIAGDSYCRIPVLVIVKEISIQTVSHSQKGNEGGIQPWINIQVCAFINEAGF*






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