Glyma04g04890 - SoyBase

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Report for Sequence Feature Glyma04g04890

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3646295
stop:	3650846
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65550	AT	Annotation by Michelle Graham. TAIR10: Xanthine/uracil permease family protein \| chr1:24367694-24370800 REVERSE LENGTH=541	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG1292	KOG	Xanthine/uracil transporters	JGI		ISS
PTHR11119	Panther	PURINE PERMEASE	JGI		ISS
PTHR11119:SF8	Panther	SODIUM-DEPENDENT VITAMIN C TRANSPORTER	JGI		ISS
PF00860	PFAM	Permease family	JGI		ISS
UniRef100_G7JW84	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xanthine/uracil/vitamin C permease n=1 Tax=Medicago truncatula RepID=G7JW84_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339515	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339515 related cluster n=1 Tax=unknown RepID=UPI0002339515	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04890

Paralog	Evidence	Comments
Glyma06g04990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g046400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04890

Limit To All Plant Sequences

>Glyma04g04890.2   sequence type=transcript   gene model=Glyma04g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGGCAGTGAGCATGCCGGTGCCGGTGGCCGTGGCGGCGGCAACTCACAGTCTCAAGTGATTCAAGTTCCTGAACCTGAACCACACCCAGTGATGGAGCAATTACCTGATGTTCACTATTGCATTAACAGTCCTCCTCCTTGGCCACAAGCACTGCTATTGGGATTCCAGCATTATATTCTGACTCTTGGCATGACCGTTCTGATTCCAACTGTGATTGTTCCTGAAATGGGTGGAGGCCATGCTGAGAAGGCCAAGGTGATACAGAATCTATTGTTTGTTTCTGGATTAAGCACACTTCTCCAAACTTGGTTCGGAACACGATTGCCAACTGTAGTTGTTGGTTCATACAGTTACATAATACCCACAATGTCAATTGTCCATGCCAAGAGATACAGTAACTATACAGACCCTTATGAGAGGTTCACTCACACAATTAGAGGAATACAAGGCGCCTTGATCATAAGTTCAATTTTCCATGTGTGTATGGGATTCTTGGGCATTTGGAGGTTTGCTATCAGGTTCCTAAGCCCACTTTCTGTAGTACCTTATGTAACGTTTACTGGACTCAGTCTTTATCATCTTGGATTCCCAATGCTGGCAAAATGTGTTGAAGTGGGGCTTCCAGCACTGATTGTTATGGTTTTCATCTCACAGTATCTTAATCATTTTGTTAGCACCAAGAGGCTTATGTATGAGCGATTTGCGCTGTTGTTTTCCATTGCAAGTGCATGGTTACTTGCACAGCTTCTGACTTCAAGCACTGCATATAACCACAAGCCAGAAAGTACTCAGAATAGTTGCCGCACTGATCGTGCTGGTCTTATTAGTGGTTCTGAATGGTTTCATCTCCCTTTAGTTCCCTTCCCATGGGGGGTTCCTACCTTCAACTTCGGAGAAGCTCTTGCTATGATAGCCGCTTCTTTTGTTTCTCTATTTGAGTCTACTGGTACATTTTATGCTGCGGCAAGATATGGAAGTGGAACACCCGTGCCACCACATGTTGTGAGCCGTGGAACTGGCTGGGTGGGAGTAGCTTCTTTGGTCAATGGCTTTGTTGGTTCTGTAACCGGATGTACGGCATCAGTGGAGAATGCTGGATTATTGGCATTGACAAAGGCGGGAAGCCGAAGAGTCATCCAAATATCAGCCGGCTTTATGATTTTCTTCTCTATTGCTGGAAAACTTGGAGCAGTTTTAGCTTCTATACCTTTGCCAATCATAGCAGCAATGAACTGTATATTCTTCGGCTATGTCTGTAAGTTCTCTCTAACCATCTGTCTTTGTAGCTTTGGCAACCCATAGAACTTGACAAGAGTTTGCAACTTGGGATGTGCAGCTTCTGCAGGTCTTGATTTTCTACAGTTCTGTAATCTCAACAGTTTCAGAACCAAATTCGTGTTGGGTCTCTCATTCTTCCTCGGCATCTCCATTCCGCAATATTTCATAGAATATTTTCATGTAAAGCATCATCACGGATGGTTCAATGATATCGTTAGCGTGATCTTCATGTCGCATACAACGGTGGCTGCATTGGTTGCGTTCATTTTGGACATCACACTCTCACGTGAAGATGATGCAGTCCGTAAGGACATTGGTTTGCAGTGGTGGGAGAAGTTCAGTGTATATAATGCTGATGGTCGGAATGCTGATTTCTATAAATTACCATGTAGACTCAATGAATTCTTCCCTGCCCTTTAAGCAGCTTCTTTGGTTATATTATAGATGTTCATTTTAACCCTTTAAGCCAATT

Coding sequences of Glyma04g04890

Limit To All Plant Sequences

>Glyma04g04890.1   sequence type=CDS   gene model=Glyma04g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGGCAGTGAGCATGCCGGTGCCGGTGGCCGTGGCGGCGGCAACTCACAGTCTCAAGTGATTCAAGTTCCTGAACCTGAACCACACCCAGTGATGGAGCAATTACCTGATGTTCACTATTGCATTAACAGTCCTCCTCCTTGGCCACAAGCACTGCTATTGGGATTCCAGCATTATATTCTGACTCTTGGCATGACCGTTCTGATTCCAACTGTGATTGTTCCTGAAATGGGTGGAGGCCATGCTGAGAAGGCCAAGGTGATACAGAATCTATTGTTTGTTTCTGGATTAAGCACACTTCTCCAAACTTGGTTCGGAACACGATTGCCAACTGTAGTTGTTGGTTCATACAGTTACATAATACCCACAATGTCAATTGTCCATGCCAAGAGATACAGTAACTATACAGACCCTTATGAGAGGTTCACTCACACAATTAGAGGAATACAAGGCGCCTTGATCATAAGTTCAATTTTCCATGTGTGTATGGGATTCTTGGGCATTTGGAGGTTTGCTATCAGGTTCCTAAGCCCACTTTCTGTAGTACCTTATGTAACGTTTACTGGACTCAGTCTTTATCATCTTGGATTCCCAATGCTGGCAAAATGTGTTGAAGTGGGGCTTCCAGCACTGATTGTTATGTATCTTAATCATTTTGTTAGCACCAAGAGGCTTATGTATGAGCGATTTGCGCTGTTGTTTTCCATTGCAAGTGCATGGTTACTTGCACAGCTTCTGACTTCAAGCACTGCATATAACCACAAGCCAGAAAGTACTCAGAATAGTTGCCGCACTGATCGTGCTGGTCTTATTAGTGGTTCTGAATGGTTTCATCTCCCTTTAGTTCCCTTCCCATGGGGGGTTCCTACCTTCAACTTCGGAGAAGCTCTTGCTATGATAGCCGCTTCTTTTGTTTCTCTATTTGAGTCTACTGGTACATTTTATGCTGCGGCAAGATATGGAAGTGGAACACCCGTGCCACCACATGTTGTGAGCCGTGGAACTGGCTGGGTGGGAGTAGCTTCTTTGGTCAATGGCTTTGTTGGTTCTGTAACCGGATGTACGGCATCAGTGGAGAATGCTGGATTATTGGCATTGACAAAGGCGGGAAGCCGAAGAGTCATCCAAATATCAGCCGGCTTTATGATTTTCTTCTCTATTGCTGGAAAACTTGGAGCAGTTTTAGCTTCTATACCTTTGCCAATCATAGCAGCAATGAACTGTATATTCTTCGGCTATGTCTCTTCTGCAGGTCTTGATTTTCTACAGTTCTGTAATCTCAACAGTTTCAGAACCAAATTCGTGTTGGGTCTCTCATTCTTCCTCGGCATCTCCATTCCGCAATATTTCATAGAATATTTTCATGTAAAGCATCATCACGGATGGTTCAATGATATCGTTAGCGTGATCTTCATGTCGCATACAACGGTGGCTGCATTGGTTGCGTTCATTTTGGACATCACACTCTCACGTGAAGATGATGCAGTCCGTAAGGACATTGGTTTGCAGTGGTGGGAGAAGTTCAGTGTATATAATGCTGATGGTCGGAATGCTGATTTCTATAAATTACCATGTAGACTCAATGAATTCTTCCCTGCCCTTTAA

>Glyma04g04890.2   sequence type=CDS   gene model=Glyma04g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGGCAGTGAGCATGCCGGTGCCGGTGGCCGTGGCGGCGGCAACTCACAGTCTCAAGTGATTCAAGTTCCTGAACCTGAACCACACCCAGTGATGGAGCAATTACCTGATGTTCACTATTGCATTAACAGTCCTCCTCCTTGGCCACAAGCACTGCTATTGGGATTCCAGCATTATATTCTGACTCTTGGCATGACCGTTCTGATTCCAACTGTGATTGTTCCTGAAATGGGTGGAGGCCATGCTGAGAAGGCCAAGGTGATACAGAATCTATTGTTTGTTTCTGGATTAAGCACACTTCTCCAAACTTGGTTCGGAACACGATTGCCAACTGTAGTTGTTGGTTCATACAGTTACATAATACCCACAATGTCAATTGTCCATGCCAAGAGATACAGTAACTATACAGACCCTTATGAGAGGTTCACTCACACAATTAGAGGAATACAAGGCGCCTTGATCATAAGTTCAATTTTCCATGTGTGTATGGGATTCTTGGGCATTTGGAGGTTTGCTATCAGGTTCCTAAGCCCACTTTCTGTAGTACCTTATGTAACGTTTACTGGACTCAGTCTTTATCATCTTGGATTCCCAATGCTGGCAAAATGTGTTGAAGTGGGGCTTCCAGCACTGATTGTTATGGTTTTCATCTCACAGTATCTTAATCATTTTGTTAGCACCAAGAGGCTTATGTATGAGCGATTTGCGCTGTTGTTTTCCATTGCAAGTGCATGGTTACTTGCACAGCTTCTGACTTCAAGCACTGCATATAACCACAAGCCAGAAAGTACTCAGAATAGTTGCCGCACTGATCGTGCTGGTCTTATTAGTGGTTCTGAATGGTTTCATCTCCCTTTAGTTCCCTTCCCATGGGGGGTTCCTACCTTCAACTTCGGAGAAGCTCTTGCTATGATAGCCGCTTCTTTTGTTTCTCTATTTGAGTCTACTGGTACATTTTATGCTGCGGCAAGATATGGAAGTGGAACACCCGTGCCACCACATGTTGTGAGCCGTGGAACTGGCTGGGTGGGAGTAGCTTCTTTGGTCAATGGCTTTGTTGGTTCTGTAACCGGATGTACGGCATCAGTGGAGAATGCTGGATTATTGGCATTGACAAAGGCGGGAAGCCGAAGAGTCATCCAAATATCAGCCGGCTTTATGATTTTCTTCTCTATTGCTGGAAAACTTGGAGCAGTTTTAGCTTCTATACCTTTGCCAATCATAGCAGCAATGAACTGTATATTCTTCGGCTATGTCTGTAAGTTCTCTCTAACCATCTGTCTTTGTAGCTTTGGCAACCCATAG

Predicted protein sequences of Glyma04g04890

Limit To All Plant Sequences

>Glyma04g04890.1   sequence type=predicted peptide   gene model=Glyma04g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEGSEHAGAGGRGGGNSQSQVIQVPEPEPHPVMEQLPDVHYCINSPPPWPQALLLGFQHYILTLGMTVLIPTVIVPEMGGGHAEKAKVIQNLLFVSGLSTLLQTWFGTRLPTVVVGSYSYIIPTMSIVHAKRYSNYTDPYERFTHTIRGIQGALIISSIFHVCMGFLGIWRFAIRFLSPLSVVPYVTFTGLSLYHLGFPMLAKCVEVGLPALIVMYLNHFVSTKRLMYERFALLFSIASAWLLAQLLTSSTAYNHKPESTQNSCRTDRAGLISGSEWFHLPLVPFPWGVPTFNFGEALAMIAASFVSLFESTGTFYAAARYGSGTPVPPHVVSRGTGWVGVASLVNGFVGSVTGCTASVENAGLLALTKAGSRRVIQISAGFMIFFSIAGKLGAVLASIPLPIIAAMNCIFFGYVSSAGLDFLQFCNLNSFRTKFVLGLSFFLGISIPQYFIEYFHVKHHHGWFNDIVSVIFMSHTTVAALVAFILDITLSREDDAVRKDIGLQWWEKFSVYNADGRNADFYKLPCRLNEFFPAL*

>Glyma04g04890.2   sequence type=predicted peptide   gene model=Glyma04g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEGSEHAGAGGRGGGNSQSQVIQVPEPEPHPVMEQLPDVHYCINSPPPWPQALLLGFQHYILTLGMTVLIPTVIVPEMGGGHAEKAKVIQNLLFVSGLSTLLQTWFGTRLPTVVVGSYSYIIPTMSIVHAKRYSNYTDPYERFTHTIRGIQGALIISSIFHVCMGFLGIWRFAIRFLSPLSVVPYVTFTGLSLYHLGFPMLAKCVEVGLPALIVMVFISQYLNHFVSTKRLMYERFALLFSIASAWLLAQLLTSSTAYNHKPESTQNSCRTDRAGLISGSEWFHLPLVPFPWGVPTFNFGEALAMIAASFVSLFESTGTFYAAARYGSGTPVPPHVVSRGTGWVGVASLVNGFVGSVTGCTASVENAGLLALTKAGSRRVIQISAGFMIFFSIAGKLGAVLASIPLPIIAAMNCIFFGYVCKFSLTICLCSFGNP*

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