Glyma04g04880 - SoyBase

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Report for Sequence Feature Glyma04g04880

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3635529
stop:	3639906
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10200	AT	Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein \| chr1:3346677-3347763 REVERSE LENGTH=190	SoyBase	E_val: 6.00E-117	ISS
GO:0051017	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0015629	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0051015	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin filament binding	SoyBase	N/A	ISS
KOG1700	KOG	Regulatory protein MLP and related LIM proteins	JGI		ISS
PTHR24206	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24206:SF66	Panther		JGI		ISS
PF00412	PFAM	LIM domain	JGI		ISS
UniRef100_B7FH07	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor lim1 n=1 Tax=Medicago truncatula RepID=B7FH07_MEDTR	SoyBase	E_val: 2.00E-124	ISS
UniRef100_C6SWD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWD0_SOYBN	SoyBase	E_val: 2.00E-142	ISS

Expression Patterns of Glyma04g04880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04880

Paralog	Evidence	Comments
Glyma06g04980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g046200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04880

Limit To All Plant Sequences

>Glyma04g04880.1   sequence type=CDS   gene model=Glyma04g04880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACCGCAGATAACCGAGTGTACCATAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTCAGCAACTATAACTCTTTTGAAGGAGTTCTTTACTGCAGGCCACACTTTGACCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCGGGGAAGAGAAACCTGCAGCAACCAAAGTCTCAAGTATGTTTGGTGGAACTAGAGATAAATGTGCGGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTTACCGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAACTACATTGCACACGAAGGCAAACTCTACTGCAAGCACCACCACATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAACTTGAAGGTGACCATGAGAAGAGTACAGAGGAAGAGAAAATCAACGGTGAAGTGGTTGCAGCTGAGACATGA

Predicted protein sequences of Glyma04g04880

Limit To All Plant Sequences

>Glyma04g04880.1   sequence type=predicted peptide   gene model=Glyma04g04880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGEEKPAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKSTEEEKINGEVVAAET*

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