Glyma04g04870 - SoyBase

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Report for Sequence Feature Glyma04g04870

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3628743
stop:	3634478
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22370	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:7406587-7408509 FORWARD LENGTH=298	SoyBase	E_val: 0	ISS
GO:0007346	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1533	KOG	Predicted GTPase	JGI		ISS
PTHR21231	Panther	XPA-BINDING PROTEIN 1-RELATED	JGI		ISS
PTHR21231:SF3	Panther	XPA-BINDING PROTEIN 1-RELATED	JGI		ISS
PF03029	PFAM	Conserved hypothetical ATP binding protein	JGI		ISS
UniRef100_B9R6Z6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6Z6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JTR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTR3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04870

Paralog	Evidence	Comments
Glyma06g04970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g046100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04870

Limit To All Plant Sequences

>Glyma04g04870.3   sequence type=transcript   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCTAAAAGTCTTTTTGTATTCGAGTTATTGGGCTTTACGCCTTTAGCTAGTGCTGGTAGTAAAGAGTTGAATAGCGTTTTTCACTTCTTTTTTTTTTTTCATTTTGTTTTGCTACCCTAATAGACACGAGGACTATTTAAAAACCCGGACCGTCGTATCGTTCCACCGGCGCCGTCAACCTCCAAGGCTCGAACCACCATCCTTCCACTCAACCGCGCACTTGCACTCGTCGGCTCAAGCTACCACCGCAGCACGCCTCAGCCGCCGCCAGTTAACAAGCATTTGCTCATAAAGAAGGAAGGAAGATGGTGTTTGGGCAAGTAGTGGTTGGTCCTCCTGGCTCTGGAAAAACAACTTACTGCAATGGCATGTCTCAGTTTCTCAGTCTTATTGGAAGGAAGGTTGCTGTTATCAATTTGGATCCCGCTAATGATTCGTTACCCTATGAATGTGCTGTGAACATCGAGGATCTCGTGAAACTAAGTGATGTAATGGTGGAACATTCGCTTGGACCAAATGGAGGTCTTGTGTATTGTATGGATTATCTTGAGAAAAATATTGACTGGTTGGAAGCAAAATTGGAACCTCTTCTGAAAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTTTTTTTTCTCCATTCAAGTGCCAAGAATGTCATCCTGAAGCTCATAAAGAAATTGAACCTAAGGCTAACTGCAGTGCATTTGATTGATGCCCATCTTTGCAGTGACCCTGGGAAGTATATTAGTGCATTGATTTTATCCTTGTCCACAATGCTACATCTAGAACTCCCTCACATAAATGTCTTGTCAAAAATTGATTTAATTGAGAGCTATGGAAAGCTAGCCTTTAACCTTGATTTCTATACAGACGTGCAAGACTTGTCATATTTACAACACCATCTGGATCAGGATCCTCGTTCTGCTAAGTACAGAAAGCTCACAAAGGAATTATGTGACATTATTGAAAACTTCAGTCTTGTGAGTTTTTCAACCTTAGATATTCAGGACAAAGAGAGTGTAGGGAATTTAGTGAAGCTGATAGACAAAAGCAATGGGTACATATTTGTTGGGATGGAAGCAAGTGCAGTTGAATTTAGCAAGATTGCGGTTGGTCCTGTCAATTGGGATTATTATAGAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATATTGATGATAATGAATGATGGGGAAAGGTAGATGATTGAAAGAGAATAACACCTTGGTGAGTAATTTTACTTTCTTTATTCATTGTTATGTTGCTTTTGTTTTTGTGTTGGGTGACTTGTCATACAATGGTGAACAGTACTTATAGCTTGTGACTCCCATAGAAGATATTGCACAGGTTATTTATTGTGATAGTTTGGATTTCTCGACCTTATAGTAATGAACATCATGAAAACATAGCGGAAGGCAGGGGGAGTTACTACTTTCAAGATATTAGCTAATTCAGGGCTTGTCCAACTGCCAAAGAACAACTTCCAGATTTGGCTAACTTTGTATAATATTATAATTCTGTGGCTTATAGTTCTGAATGAGATTTTTGTTTGTTCTTTGAAGTCAATTCATTTTAACTATCGCATCAAGCGTATGTGTTTTCTCTTTGTTGGAGATGAGCTTTACTTGTGAATGAGTAATATCACAAAGGAAATGAATTACATTTTGTAAAGATAGGGACTGAAATAATTGTTTATA

>Glyma04g04870.4   sequence type=transcript   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTACCCTAATAGACACGAGGACTATTTAAAAACCCGGACCGTCGTATCGTTCCACCGGCGCCGTCAACCTCCAAGGCTCGAACCACCATCCTTCCACTCAACCGCGCACTTGCACTCGTCGGCTCAAGCTACCACCGCAGCACGCCTCAGCCGCCGCCAGTTAACAAGCATTTGCTCATAAAGAAGGAAGGAAGATGGTGTTTGGGCAAGTAGTGGTTGGTCCTCCTGGCTCTGGAAAAACAACTTACTGCAATGGCATGTCTCAGTTTCTCAGTCTTATTGGAAGGAAGGTTGCTGTTATCAATTTGGATCCCGCTAATGATTCGTTACCCTATGAATGTGCTGTGAACATCGAGGATCTCGTGAAACTAAGTGATGTAATGGTGGAACATTCGCTTGGACCAAATGGAGGTCTTGTGTATTGTATGGATTATCTTGAGAAAAATATTGACTGGTTGGAAGCAAAATTGGAACCTCTTCTGAAAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTTTTTTTTCTCCATTCAAGTGCCAAGAATGTCATCCTGAAGCTCATAAAGAAATTGAACCTAAGGCTAACTGCAGTGCATTTGATTGATGCCCATCTTTGCAGTGACCCTGGGAAGTATATTAGTGCATTGATTTTATCCTTGTCCACAATGCTACATCTAGAACTCCCTCACATAAATGTCTTGTCAAAAATTGATTTAATTGAGAGCTATGGAAAGCTAGCCTTTAACCTTGATTTCTATACAGACGTGCAAGACTTGTCATATTTACAACACCATCTGGATCAGGATCCTCGTTCTGCTAAGTACAGAAAGCTCACAAAGGAATTATGTGACATTATTGAAAACTTCAGTCTTGTGAGTTTTTCAACCTTAGATATTCAGGACAAAGAGAGTGTAGGGAATTTAGTGAAGCTGATAGACAAAAGCAATGGGTACATATTTGTTGGGATGGAAGCAAGTGCAGTTGAATTTAGCAAGATTGCGGTTGGTCCTGTCAATTGGGATTATTATAGAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATATTGATGATAATGAATGATGGGGAAAGGTAGATGATTGAAAGAGAATAACACCTTGATATTGCACAGGTTATTTATTGTGATAGTTTGGATTTCTCGACCTTATAGTAATGAACATCATGAAAACATAGCGGAAGGCAGGGGGAGTTACTACTTTCAAGATATTAGCTAATTCAGGGCTTGTCCAACTGCCAAAGAACAACTTCCAGATTTGGCTAACTTTGTATAATATTATAATTCTGTGGCTTATAGTTCTGAATGAGATTTTTGTTTGTTCTTTGAAGTCAATTCATTTTAACTATCGCATCAAGCGTATGTGTTTTCTCTTTGTTGGAGATGAGCTTTACTTGTGAATGAGTAATATCACAAAGGAAATGAATTACATTTTGTAAAGATAGGGACTGAAATAATTGTTTAT

Coding sequences of Glyma04g04870

Limit To All Plant Sequences

>Glyma04g04870.2   sequence type=CDS   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTTGGGCAAGTAGTGGTTGGTCCTCCTGGCTCTGGAAAAACAACTTACTGCAATGGCATGTCTCAGTTTCTCAGTCTTATTGGAAGGAAGGTTGCTGTTATCAATTTGGATCCCGCTAATGATTCGTTACCCTATGAATGTGCTGTGAACATCGAGGATCTCGTGAAACTAAGTGATGTAATGGTGGAACATTCGCTTGGACCAAATGGAGGTCTTGTGTATTGTATGGATTATCTTGAGAAAAATATTGACTGGTTGGAAGCAAAATTGGAACCTCTTCTGAAAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTTTTTTTTCTCCATTCAAGTGCCAAGAATGTCATCCTGAAGCTCATAAAGAAATTGAACCTAAGGCTAACTGCAGTGCATTTGATTGATGCCCATCTTTGCAGTGACCCTGGGAAGTATATTAGTGCATTGATTTTATCCTTGTCCACAATGCTACATCTAGAACTCCCTCACATAAATGTCTTGTCAAAAATTGATTTAATTGAGAGCTATGGAAAGCTAGCCTTTAACCTTGATTTCTATACAGACGTGCAAGACTTGTCATATTTACAACACCATCTGGATCAGGATCCTCGTTCTGCTAAGTACAGAAAGCTCACAAAGGAATTATGTGACATTATTGAAAACTTCAGTCTTGTGAGTTTTTCAACCTTAGATATTCAGGACAAAGAGAGTGTAGGGAATTTAGTGAAGCTGATAGACAAAAGCAATGGGTACATATTTGTTGGGATGGAAGCAAGTGCAGTTGAATTTAGCAAGATTGCGGTTGGTCCTGTCAATTGGGATTATTATAGAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATATTGATGATAATGAATGA

>Glyma04g04870.3   sequence type=CDS   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTTGGGCAAGTAGTGGTTGGTCCTCCTGGCTCTGGAAAAACAACTTACTGCAATGGCATGTCTCAGTTTCTCAGTCTTATTGGAAGGAAGGTTGCTGTTATCAATTTGGATCCCGCTAATGATTCGTTACCCTATGAATGTGCTGTGAACATCGAGGATCTCGTGAAACTAAGTGATGTAATGGTGGAACATTCGCTTGGACCAAATGGAGGTCTTGTGTATTGTATGGATTATCTTGAGAAAAATATTGACTGGTTGGAAGCAAAATTGGAACCTCTTCTGAAAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTTTTTTTTCTCCATTCAAGTGCCAAGAATGTCATCCTGAAGCTCATAAAGAAATTGAACCTAAGGCTAACTGCAGTGCATTTGATTGATGCCCATCTTTGCAGTGACCCTGGGAAGTATATTAGTGCATTGATTTTATCCTTGTCCACAATGCTACATCTAGAACTCCCTCACATAAATGTCTTGTCAAAAATTGATTTAATTGAGAGCTATGGAAAGCTAGCCTTTAACCTTGATTTCTATACAGACGTGCAAGACTTGTCATATTTACAACACCATCTGGATCAGGATCCTCGTTCTGCTAAGTACAGAAAGCTCACAAAGGAATTATGTGACATTATTGAAAACTTCAGTCTTGTGAGTTTTTCAACCTTAGATATTCAGGACAAAGAGAGTGTAGGGAATTTAGTGAAGCTGATAGACAAAAGCAATGGGTACATATTTGTTGGGATGGAAGCAAGTGCAGTTGAATTTAGCAAGATTGCGGTTGGTCCTGTCAATTGGGATTATTATAGAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATATTGATGATAATGAATGA

>Glyma04g04870.4   sequence type=CDS   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTTGGGCAAGTAGTGGTTGGTCCTCCTGGCTCTGGAAAAACAACTTACTGCAATGGCATGTCTCAGTTTCTCAGTCTTATTGGAAGGAAGGTTGCTGTTATCAATTTGGATCCCGCTAATGATTCGTTACCCTATGAATGTGCTGTGAACATCGAGGATCTCGTGAAACTAAGTGATGTAATGGTGGAACATTCGCTTGGACCAAATGGAGGTCTTGTGTATTGTATGGATTATCTTGAGAAAAATATTGACTGGTTGGAAGCAAAATTGGAACCTCTTCTGAAAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTTTTTTTTCTCCATTCAAGTGCCAAGAATGTCATCCTGAAGCTCATAAAGAAATTGAACCTAAGGCTAACTGCAGTGCATTTGATTGATGCCCATCTTTGCAGTGACCCTGGGAAGTATATTAGTGCATTGATTTTATCCTTGTCCACAATGCTACATCTAGAACTCCCTCACATAAATGTCTTGTCAAAAATTGATTTAATTGAGAGCTATGGAAAGCTAGCCTTTAACCTTGATTTCTATACAGACGTGCAAGACTTGTCATATTTACAACACCATCTGGATCAGGATCCTCGTTCTGCTAAGTACAGAAAGCTCACAAAGGAATTATGTGACATTATTGAAAACTTCAGTCTTGTGAGTTTTTCAACCTTAGATATTCAGGACAAAGAGAGTGTAGGGAATTTAGTGAAGCTGATAGACAAAAGCAATGGGTACATATTTGTTGGGATGGAAGCAAGTGCAGTTGAATTTAGCAAGATTGCGGTTGGTCCTGTCAATTGGGATTATTATAGAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATATTGATGATAATGAATGA

Predicted protein sequences of Glyma04g04870

Limit To All Plant Sequences

>Glyma04g04870.2   sequence type=predicted peptide   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFGQVVVGPPGSGKTTYCNGMSQFLSLIGRKVAVINLDPANDSLPYECAVNIEDLVKLSDVMVEHSLGPNGGLVYCMDYLEKNIDWLEAKLEPLLKDHYLLFDFPGQVELFFLHSSAKNVILKLIKKLNLRLTAVHLIDAHLCSDPGKYISALILSLSTMLHLELPHINVLSKIDLIESYGKLAFNLDFYTDVQDLSYLQHHLDQDPRSAKYRKLTKELCDIIENFSLVSFSTLDIQDKESVGNLVKLIDKSNGYIFVGMEASAVEFSKIAVGPVNWDYYRVAAVQEKYMKDDENIDDNE*

>Glyma04g04870.3   sequence type=predicted peptide   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFGQVVVGPPGSGKTTYCNGMSQFLSLIGRKVAVINLDPANDSLPYECAVNIEDLVKLSDVMVEHSLGPNGGLVYCMDYLEKNIDWLEAKLEPLLKDHYLLFDFPGQVELFFLHSSAKNVILKLIKKLNLRLTAVHLIDAHLCSDPGKYISALILSLSTMLHLELPHINVLSKIDLIESYGKLAFNLDFYTDVQDLSYLQHHLDQDPRSAKYRKLTKELCDIIENFSLVSFSTLDIQDKESVGNLVKLIDKSNGYIFVGMEASAVEFSKIAVGPVNWDYYRVAAVQEKYMKDDENIDDNE*

>Glyma04g04870.4   sequence type=predicted peptide   gene model=Glyma04g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFGQVVVGPPGSGKTTYCNGMSQFLSLIGRKVAVINLDPANDSLPYECAVNIEDLVKLSDVMVEHSLGPNGGLVYCMDYLEKNIDWLEAKLEPLLKDHYLLFDFPGQVELFFLHSSAKNVILKLIKKLNLRLTAVHLIDAHLCSDPGKYISALILSLSTMLHLELPHINVLSKIDLIESYGKLAFNLDFYTDVQDLSYLQHHLDQDPRSAKYRKLTKELCDIIENFSLVSFSTLDIQDKESVGNLVKLIDKSNGYIFVGMEASAVEFSKIAVGPVNWDYYRVAAVQEKYMKDDENIDDNE*

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