Report for Sequence Feature Glyma04g04850
Feature Type: gene_model
Chromosome: Gm04
Start: 3611802
stop: 3616023
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g04850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G27460 AT
Annotation by Michelle Graham. TAIR10: no pollen germination related 1 | chr1:9534977-9537424 FORWARD LENGTH=694
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
KOG4162
KOG
Predicted calmodulin-binding protein
JGI ISS
PTHR23083 Panther
O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT
JGI ISS
PTHR23083:SF174 Panther
SUBFAMILY NOT NAMED
JGI ISS
UniRef100_B9R701 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9R701_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JTR1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTR1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g04850
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g04850
Paralog Evidence Comments
Glyma06g04950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g04850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g045800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g04850
Coding sequences of Glyma04g04850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g04850.1 sequence type=CDS gene model=Glyma04g04850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGTGCGCTTGTTCTTCCGGGGAGCAATTCATATTCGAAGAGCCGCCGCACTCGCCGGAGTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCGGAGAATGGGAACCTAAATTCGATGAAACTCAAGTAGAAGAAGCTGAATCTATTCTTAAAGAAGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAACTTCGATGCTGCACTTCAAGTATTTCAGGGTATAGACATCAAGGGTTTGGCCCCAAGAATGATCAAGGCTATTGCCGAAAGAACCAAGCAAAGAAAACCGCGTTCCAAGGCAGATATCATGGTTCCGAATGTGATGTCATTGCATTCGGTTAGCCTGCTTCTAGAAGCAATTTTGCTTAAAGCAAGATCGTTGGAGGAACTTGGGCAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATATAGCATTGGAGTTGTTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTAGATGAAGCTGTCACTGCATATCATCGTGCTCTTGTCAAGCCATGGAATTTGGAGCCAAGAAGGTTGGCTGCTGTACAAAAAGATTTAGCTATGATACTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAGGTGTGGAGTAAAACTGCACCCAAGAGTAGTGTTGAAGAAGCAATACTTATGCTATTAATACTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACGGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGTTATTTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATGAGGTAGCATTGAACCTTTTGAGGAAAGCTTGCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCTTAGACCCTCACCATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCAAAATGAGCATTTTCTTAGTCAAGGCCATAAATTTCTTGGCATCTGCTATGGGGCTGCCGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTATGCTGCTGTAAGTGAAAATGATGACCTGGAAGTGATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGATGTCCTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGCAGCTATTAGCACTCATAGTATCTGCACAGCAGCGATTTAAGGATGCTGAAACTATAGTTGATTGTGCTTTAGATGAGTCTGGTGGGATGGATCAACTTGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCGGCAACCCAAGCAAGCAATAGAGACATATAGGATCTTGCTAGCGCTAATTCAGGCAAAAAAGGAGCTTTTGATTCAAGATAACAACATTGATCAAGGACAAACATTCAGGCATGAGGCATTAACAGAAAGGAAGCTGGAAATGGAAGCATGGCAGGATTTGGCTACTATTTATACAGATGTCGATTCCTTGCTTGATGCAAAAACTTGTGTTGACAAAGCCCAGTTGATAGAATTTTTCTCTCCAAGAAGTTGGCATATTACAGGGATGTTGCTAGAAGCTCAATCATTATACAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCCACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCGATTGCAAGAAGTTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTACAAGAATTTAAATAA
Predicted protein sequences of Glyma04g04850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g04850.1 sequence type=predicted peptide gene model=Glyma04g04850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLCACSSGEQFIFEEPPHSPESLATRDFSASGLSSRTGEWEPKFDETQVEEAESILKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLAPRMIKAIAERTKQRKPRSKADIMVPNVMSLHSVSLLLEAILLKARSLEELGQCIEAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHIALELFPSLWIKAGFLDEAVTAYHRALVKPWNLEPRRLAAVQKDLAMILLYGGVEVSLPSQLQVWSKTAPKSSVEEAILMLLILMSKVAIREIDWDAEIMDHLTFALSVTGMFELLADHVEQILPVIYSRAERWYFLALCYSAAGHDEVALNLLRKACGSSEANHRPHFPSFLFGAKLCSLDPHHAHEGINFSREVIDLAKHQNEHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNYAAVSENDDLEVIFSLGLENAIQRNLDAAYNNIMMSSDMTVGSSRGWQLLALIVSAQQRFKDAETIVDCALDESGGMDQLELLRLKAVLQIAQRQPKQAIETYRILLALIQAKKELLIQDNNIDQGQTFRHEALTERKLEMEAWQDLATIYTDVDSLLDAKTCVDKAQLIEFFSPRSWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQEFK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
