Glyma04g04840 - SoyBase

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Report for Sequence Feature Glyma04g04840

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3603591
stop:	3607395
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27840	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:9693332-9696257 REVERSE LENGTH=450	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG4283	KOG	Transcription-coupled repair protein CSA, contains WD40 domain	JGI		ISS
PTHR22850	Panther	WD40 REPEAT FAMILY	JGI		ISS
PTHR22850:SF2	Panther	COCKAYNE SYNDROME WD-REPEAT PROTEIN CSA (DNA EXCISION REPAIR PROTEIN ERCC-8)	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9R702	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9R702_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JTR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04840

Paralog	Evidence	Comments
Glyma06g04930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g045700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04840

Limit To All Plant Sequences

>Glyma04g04840.1   sequence type=CDS   gene model=Glyma04g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAAGCAAACGCATAGGCATGTGTGGAAGCGGATCAGAGACAGGGAAGCTGGGAAATTGCGTGCAAACCATTTCGCGAACCGCATAAAATCCAATCGCATTTCGCAACTCCAGTTGTCCAATCACAAAGACATTGTCTCACCTCACAAAGGCGCCATCAACTCCCTTCAGGTTGATTCGACAGAGGGAAGATATTTGCTATCCGCTGCCTCCGATGCCTCGGTAGCAGTGTACGACGTCCAACGACCCACCGTTTACGAAGCAGGCGGCGGCGGCGGCGGCGGCATATCGAAACACAGCTCCATATTTGTCGTTGACAAGCAGCATCAGCAAGGCCATAAATATGCGGTGTCCACAGCTATTTGGTATCCCATTGACACTGGCTTGTTCGTCACTGGCTCTTACGATCATCACATTAATGTTTGGGATACCAATACCACCCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTTCATAGGGCTGCAATGTCCAATTTGTCAACGTCTCACATGCTTATTGCTGCTGCCACTGAGGATGTCCAAGTTCGCCTTTGTGATATTGCTTCCGGGGCTTTTGCTCACACTTTGTCCGGTCACCGTGATGGAGTTATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGACGCGCTGGCTGTTTCCAAGTTTTAGATCAATCTCAGACTCAGCTTGGAAGACGCCCACCTATACTCAAACGCTCCATGATAACTAAGGATTCAAGTACAAAATTGCGTGCTGCTCAGAAGAAACATGCTAATGGAAGTGGTAGCAGACAACAACCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGATTACATCCAGGAATGTTGTCTACTCAGGATCGTGCGACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCGACTGAGGATGGCATGTATCTACTAAGTGCAGGGTCTGATTCTAGATTGAGGTTGTGGGATGTTGAATCTAGCTGCAACACACTTGTGAACTTTGAAACAGTTCGTCTGCAAATAAACAAACCTCTTCAACTAGCCACCACTCAAGATTCAGCCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACACGATATTGCGTGGTCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACATGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGATCAATCGCTGATGAAATGGAAGGAACTGCTGAGGATCAGGATAACTGGAGTAGCTGA

Predicted protein sequences of Glyma04g04840

Limit To All Plant Sequences

>Glyma04g04840.1   sequence type=predicted peptide   gene model=Glyma04g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHKQTHRHVWKRIRDREAGKLRANHFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQVDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESSCNTLVNFETVRLQINKPLQLATTQDSALVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQHDQELYTGGNDRQILVWSPARSIADEMEGTAEDQDNWSS*

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