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Report for Sequence Feature Glyma04g04801

Feature Type:gene_model
Chromosome:Gm04
Start:3561145
stop:3563126
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04801
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33880AT Annotation by Michelle Graham. TAIR10: ROOT HAIR DEFECTIVE 6-LIKE 2 | chr4:16239566-16241052 REVERSE LENGTH=352 SoyBaseE_val: 6.00E-52ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0048766GO-bp Annotation by Michelle Graham. GO Biological Process: root hair initiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR10014Panther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCRIPTION FACTOR JGI ISS
PTHR10014:SF30Panther BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7ICC1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH85 n=1 Tax=Medicago truncatula RepID=G7ICC1_MEDTR SoyBaseE_val: 1.00E-69ISS
UniRef100_UPI0002339510UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339510 related cluster n=1 Tax=unknown RepID=UPI0002339510 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g04801
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04801 not represented in the dataset
Glyma04g04801 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04801
ParalogEvidenceComments
Glyma06g04881 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04801 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g045300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04801
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g04801
>Glyma04g04801.1   sequence type=CDS   gene model=Glyma04g04801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCTGGTGTTGGAGCCTTCCCTGATGGAGAACGGGATTGCTTTGGCAAAATGTTGGCCAATGAAGCCCATTATTGCTCACCACAATTACTTGAGGAAGATGATGGGAATGTTGGAATGCAATCCATGTTTTGCTCCACTCTTGATGTTGGGGGAAATAAGAATATGTTTTACTCTTTTGACTCTCACAACTCTAGTTTGCAGTATATTTCTCAAGAAAGCAGTCACAATAATAGCACTTGTTGTGGCCATAGTGTCTTCATGGCCAATCCGGAGGATCATACAAACTACCATTTTGGTCATGTTGATCATGTGCTAGCAAATAGTACATCCATGGATTTTTGCATGATAGATGAGAAAAACCCTGGCTCTTTTGTCCAATCTGACATTGTCATGAAAGAGAATGCCAGTTTGAATGAAGATGAGGGAAGTGACAAATCAGAGAATGTTTTTCCTGCCAAACATTTGAAGTTCAAAAGGATGTCTGATCATATGCCCGAACTCAAAGTGCATGTAGAAGATAAAATAAACTCACATGGGAATGGTAACAAAAAACCTCGTGTTTCAAAAGATGAGCAGCATTGCATGAAGAACCAGAAACTTGACAAAATTGGGAACCAGGCAGAAGAGATTAATGCAGGTTCAGATGGACACAGTTCTAGTAGTTACACTCGAGAGGATGATAATGCTTCTGCTCTCAACTTCAAAGGGAAAACAAAAGCTAGTAAGGGATCAGCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATAGATGACAGGCTAAGAATTCTGCAAAATCTTGTCCCCAACGGAACAAAGGTTGATATAAGCACTATGCTTGAAGAGGCAGTCCAATACGTGAAATTTTTGCAGCTCCAGAACAAGCTTTTAAGCTCTGATGATTTGTGGATGTACGCTCCGATAGCTTATAATGGACTTGACCTCGTACTCAATCTCAATCCTAAGAGTTCTCCACCTTTGTGA
Predicted protein sequences of Glyma04g04801
>Glyma04g04801.1   sequence type=predicted peptide   gene model=Glyma04g04801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPGVGAFPDGERDCFGKMLANEAHYCSPQLLEEDDGNVGMQSMFCSTLDVGGNKNMFYSFDSHNSSLQYISQESSHNNSTCCGHSVFMANPEDHTNYHFGHVDHVLANSTSMDFCMIDEKNPGSFVQSDIVMKENASLNEDEGSDKSENVFPAKHLKFKRMSDHMPELKVHVEDKINSHGNGNKKPRVSKDEQHCMKNQKLDKIGNQAEEINAGSDGHSSSSYTREDDNASALNFKGKTKASKGSATDPQSLYARKRRERIDDRLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQNKLLSSDDLWMYAPIAYNGLDLVLNLNPKSSPPL*






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